Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03004

Experiment: monoculture; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 4
3,347,700	-		MIT1002_03003	0.72	-2.3
3,347,781	+		MIT1002_03003	0.75	-0.1
3,347,799	-		MIT1002_03003	0.76	-1.2
3,347,804	+		MIT1002_03003	0.76	-2.0
3,347,834	+		MIT1002_03003	0.77	-1.7
3,348,087	-		MIT1002_03003	0.87	+0.4
3,348,105	-		MIT1002_03003	0.87	+0.4
3,348,138	+		MIT1002_03003	0.89	-0.2
3,348,202	+				-1.0
3,348,545	+				-2.9
3,348,593	-				-0.6
3,348,593	-				-1.0
3,348,628	-				-2.9
3,348,628	-				-1.1
3,348,710	-				-0.1
3,348,710	-				-0.1
3,348,733	+		MIT1002_03004	0.10	-1.5
3,348,772	-		MIT1002_03004	0.16	-2.2
3,348,828	-		MIT1002_03004	0.23	+1.5
3,348,838	-		MIT1002_03004	0.24	-3.2
3,348,838	-		MIT1002_03004	0.24	-1.0
3,348,838	-		MIT1002_03004	0.24	-1.9
3,348,877	-		MIT1002_03004	0.30	-1.3
3,348,880	-		MIT1002_03004	0.30	-1.2
3,348,923	-		MIT1002_03004	0.36	-0.9
3,348,940	-		MIT1002_03004	0.38	-1.0
3,348,971	+		MIT1002_03004	0.42	-1.2
3,349,004	-		MIT1002_03004	0.47	+0.6
3,349,013	-		MIT1002_03004	0.48	-2.0
3,349,015	+		MIT1002_03004	0.48	-0.6
3,349,023	-		MIT1002_03004	0.49	+1.3
3,349,044	-		MIT1002_03004	0.52	-2.2
3,349,044	-		MIT1002_03004	0.52	+0.2
3,349,062	+		MIT1002_03004	0.54	-1.1
3,349,070	-		MIT1002_03004	0.56	-0.7
3,349,137	+		MIT1002_03004	0.65	+0.0
3,349,167	-		MIT1002_03004	0.69	-0.4
3,349,180	-		MIT1002_03004	0.70	+0.8
3,349,209	+		MIT1002_03004	0.74	-0.6
3,349,233	-		MIT1002_03004	0.77	-1.2
3,349,273	-		MIT1002_03004	0.83	-2.6
3,349,320	-		MIT1002_03004	0.89	-2.7
3,349,330	-				+0.4
3,349,405	-				+0.4
3,349,569	+				-3.6
3,349,587	-				-2.4
3,349,675	+				+0.1
3,349,735	-				-2.3
3,349,779	+				+0.6
3,349,779	+				-0.1
3,349,779	+				-1.2
3,349,859	-		MIT1002_03005	0.10	+0.0
3,349,876	+		MIT1002_03005	0.12	-0.9
3,349,887	-		MIT1002_03005	0.13	+0.1
3,349,964	-		MIT1002_03005	0.22	+0.5
3,350,027	-		MIT1002_03005	0.29	-0.8
3,350,101	-		MIT1002_03005	0.37	+0.7
3,350,101	-		MIT1002_03005	0.37	+0.3
3,350,103	+		MIT1002_03005	0.37	-1.7
3,350,109	-		MIT1002_03005	0.38	-0.4
3,350,134	+		MIT1002_03005	0.41	+0.5
3,350,142	-		MIT1002_03005	0.42	+0.0
3,350,219	-		MIT1002_03005	0.50	+0.2
3,350,219	-		MIT1002_03005	0.50	+0.5
3,350,224	-		MIT1002_03005	0.51	-1.5
3,350,264	+		MIT1002_03005	0.55	-0.1
3,350,264	+		MIT1002_03005	0.55	+0.0
3,350,303	-		MIT1002_03005	0.59	+0.6
3,350,303	-		MIT1002_03005	0.59	+1.0
3,350,318	+		MIT1002_03005	0.61	-2.1
3,350,319	-		MIT1002_03005	0.61	+0.1
3,350,319	-		MIT1002_03005	0.61	-0.4
3,350,400	+		MIT1002_03005	0.70	-0.3
3,350,401	-		MIT1002_03005	0.70	-0.4