Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02971

Experiment: monoculture; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 4
3,306,338	-		MIT1002_02970	0.15	-0.1
3,306,338	-		MIT1002_02970	0.15	-0.8
3,306,366	+		MIT1002_02970	0.18	+0.9
3,306,528	+		MIT1002_02970	0.38	-1.1
3,306,536	-		MIT1002_02970	0.39	+0.5
3,306,537	-		MIT1002_02970	0.39	+0.4
3,306,555	+		MIT1002_02970	0.41	-0.4
3,306,565	+		MIT1002_02970	0.42	-1.1
3,306,570	+		MIT1002_02970	0.43	-0.3
3,306,573	-		MIT1002_02970	0.43	-0.2
3,306,573	-		MIT1002_02970	0.43	-3.2
3,306,622	+		MIT1002_02970	0.49	-0.3
3,306,628	-		MIT1002_02970	0.50	-0.0
3,306,628	-		MIT1002_02970	0.50	-0.4
3,306,798	-		MIT1002_02970	0.70	-1.5
3,306,823	-		MIT1002_02970	0.73	-0.7
3,306,885	-		MIT1002_02970	0.81	+0.4
3,306,899	-		MIT1002_02970	0.83	+0.8
3,306,906	+		MIT1002_02970	0.84	+0.6
3,306,917	+		MIT1002_02970	0.85	+0.0
3,306,925	-		MIT1002_02970	0.86	-1.2
3,306,925	-		MIT1002_02970	0.86	+0.4
3,306,925	-		MIT1002_02970	0.86	-2.0
3,306,925	-		MIT1002_02970	0.86	+0.9
3,306,925	-		MIT1002_02970	0.86	+0.5
3,306,925	-		MIT1002_02970	0.86	+1.1
3,306,944	-		MIT1002_02970	0.88	+1.3
3,307,123	-				-1.2
3,307,153	-				-0.2
3,307,187	+				-0.5
3,307,303	-				+0.4
3,307,319	+				-0.1
3,307,385	-				+0.3
3,307,399	+				-2.4
3,307,405	+				+0.5
3,307,415	+				-0.5
3,307,455	-				-2.2
3,307,457	+				-2.2
3,307,475	+				-1.6
3,307,487	+				-0.9
3,307,509	-				-1.8
3,307,587	-		MIT1002_02971	0.10	+0.0
3,307,629	-		MIT1002_02971	0.11	+2.9
3,307,642	-		MIT1002_02971	0.12	-1.5
3,307,698	+		MIT1002_02971	0.14	-2.7
3,307,698	+		MIT1002_02971	0.14	-4.1
3,307,706	-		MIT1002_02971	0.14	-2.9
3,307,801	-		MIT1002_02971	0.17	-1.1
3,307,849	+		MIT1002_02971	0.19	+0.3
3,307,912	+		MIT1002_02971	0.21	-2.4
3,307,950	-		MIT1002_02971	0.23	-0.7
3,307,997	+		MIT1002_02971	0.24	+1.2
3,308,018	-		MIT1002_02971	0.25	-1.2
3,308,114	+		MIT1002_02971	0.28	-2.4
3,308,147	+		MIT1002_02971	0.29	-1.5
3,308,147	+		MIT1002_02971	0.29	-0.5
3,308,147	+		MIT1002_02971	0.29	-1.0
3,308,155	-		MIT1002_02971	0.30	-0.8
3,308,240	+		MIT1002_02971	0.33	-1.5
3,308,323	+		MIT1002_02971	0.35	-3.2
3,308,331	+		MIT1002_02971	0.36	-2.7
3,308,354	+		MIT1002_02971	0.36	-1.8
3,308,354	+		MIT1002_02971	0.36	-1.2
3,308,360	+		MIT1002_02971	0.37	-1.4
3,308,369	-		MIT1002_02971	0.37	-0.9
3,308,369	-		MIT1002_02971	0.37	-4.7
3,308,369	-		MIT1002_02971	0.37	-2.5
3,308,369	-		MIT1002_02971	0.37	-2.3
3,308,388	-		MIT1002_02971	0.38	-3.0
3,308,466	+		MIT1002_02971	0.40	-1.6
3,308,474	+		MIT1002_02971	0.41	-1.7
3,308,482	-		MIT1002_02971	0.41	-1.4
3,308,526	+		MIT1002_02971	0.42	-2.9
3,308,542	+		MIT1002_02971	0.43	+1.2
3,308,561	+		MIT1002_02971	0.44	-1.8
3,308,574	-		MIT1002_02971	0.44	-3.1
3,308,640	+		MIT1002_02971	0.46	-1.0
3,308,677	-		MIT1002_02971	0.48	-1.6
3,308,762	+		MIT1002_02971	0.51	+0.2
3,308,844	+		MIT1002_02971	0.53	-2.3
3,308,861	+		MIT1002_02971	0.54	-3.6
3,308,869	-		MIT1002_02971	0.54	+1.0
3,308,889	-		MIT1002_02971	0.55	-1.4
3,308,901	-		MIT1002_02971	0.55	+0.1
3,308,919	+		MIT1002_02971	0.56	-3.1
3,308,933	-		MIT1002_02971	0.56	+1.2
3,308,956	-		MIT1002_02971	0.57	-1.7
3,308,963	-		MIT1002_02971	0.57	-1.1
3,308,964	+		MIT1002_02971	0.58	-0.5
3,309,045	+		MIT1002_02971	0.60	-2.2
3,309,069	-		MIT1002_02971	0.61	-1.0
3,309,113	-		MIT1002_02971	0.63	-1.4
3,309,121	+		MIT1002_02971	0.63	+0.3
3,309,133	+		MIT1002_02971	0.63	-0.8
3,309,133	+		MIT1002_02971	0.63	-2.3
3,309,133	+		MIT1002_02971	0.63	-2.9
3,309,182	+		MIT1002_02971	0.65	-0.2
3,309,182	+		MIT1002_02971	0.65	+1.3
3,309,182	+		MIT1002_02971	0.65	+0.0
3,309,182	-		MIT1002_02971	0.65	-0.8
3,309,190	-		MIT1002_02971	0.65	+0.0
3,309,229	+		MIT1002_02971	0.67	-1.9
3,309,230	-		MIT1002_02971	0.67	-0.7
3,309,304	-		MIT1002_02971	0.69	+0.3
3,309,364	-		MIT1002_02971	0.71	-3.8
3,309,374	-		MIT1002_02971	0.72	-1.4
3,309,385	+		MIT1002_02971	0.72	-1.5
3,309,386	-		MIT1002_02971	0.72	-1.0
3,309,393	-		MIT1002_02971	0.72	-2.5
3,309,396	+		MIT1002_02971	0.72	-2.4
3,309,398	-		MIT1002_02971	0.72	-0.8
3,309,485	+		MIT1002_02971	0.76	+0.8
3,309,551	+		MIT1002_02971	0.78	-1.8
3,309,630	+		MIT1002_02971	0.81	-0.9
3,309,709	+		MIT1002_02971	0.83	+0.5
3,309,762	+		MIT1002_02971	0.85	-1.4
3,309,770	-		MIT1002_02971	0.85	-3.9
3,309,775	-		MIT1002_02971	0.86	-1.9
3,309,848	-		MIT1002_02971	0.88	-1.3
3,309,848	-		MIT1002_02971	0.88	-2.9
3,309,867	-		MIT1002_02971	0.89	-1.7
3,309,867	-		MIT1002_02971	0.89	-4.2
3,309,968	+				-0.7
3,310,011	-				-0.7
3,310,021	-				-1.4
3,310,033	+				-2.4
3,310,054	-				+1.0
3,310,059	+				+0.0
3,310,067	-				-2.3
3,310,116	-				-0.7
3,310,133	-				-2.3
3,310,163	+				-1.8
3,310,171	-				-2.1
3,310,199	+				+0.3
3,310,217	-				-1.2
3,310,222	+				-2.1
3,310,230	-				-1.8
3,310,361	+		MIT1002_02972	0.12	-1.1
3,310,415	+		MIT1002_02972	0.25	-2.5
3,310,425	+		MIT1002_02972	0.28	+0.6
3,310,433	-		MIT1002_02972	0.30	+0.0
3,310,453	-		MIT1002_02972	0.35	-2.1
3,310,456	-		MIT1002_02972	0.36	+0.0
3,310,644	-		MIT1002_02972	0.84	-3.4
3,310,652	-		MIT1002_02972	0.86	-2.9
3,310,652	-		MIT1002_02972	0.86	-0.5
3,310,689	+				-2.0
3,310,868	-		MIT1002_02973	0.13	+0.5
3,310,874	-		MIT1002_02973	0.13	-2.2
3,310,879	-		MIT1002_02973	0.14	-1.1
3,311,023	+		MIT1002_02973	0.27	-3.2
3,311,110	+		MIT1002_02973	0.35	+0.3
3,311,145	+		MIT1002_02973	0.38	-1.9
3,311,145	+		MIT1002_02973	0.38	+0.3
3,311,145	+		MIT1002_02973	0.38	-2.5
3,311,153	-		MIT1002_02973	0.39	-2.0
3,311,153	-		MIT1002_02973	0.39	-1.4