Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02796

Experiment: monoculture; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_02794 and MIT1002_02795 are separated by 59 nucleotidesMIT1002_02795 and MIT1002_02796 are separated by 50 nucleotidesMIT1002_02796 and MIT1002_02797 are separated by 9 nucleotides MIT1002_02794: MIT1002_02794 - Cysteine desulfuration protein SufE, at 3,098,923 to 3,099,333 _02794 MIT1002_02795: MIT1002_02795 - putative FeS assembly SUF system protein SufT, at 3,099,393 to 3,099,926 _02795 MIT1002_02796: MIT1002_02796 - Iron-sulfur cluster assembly protein, at 3,099,977 to 3,100,333 _02796 MIT1002_02797: MIT1002_02797 - putative cysteine desulfurase, at 3,100,343 to 3,101,560 _02797 Position (kb) 3099 3100 3101Strain fitness (log2 ratio) -3 -2 -1 0 1at 3099.417 kb on - strandat 3099.681 kb on + strand, within MIT1002_02795at 3100.010 kb on - strandat 3100.039 kb on - strand, within MIT1002_02796at 3100.057 kb on - strand, within MIT1002_02796at 3100.057 kb on - strand, within MIT1002_02796at 3100.110 kb on - strand, within MIT1002_02796at 3100.198 kb on - strand, within MIT1002_02796at 3100.198 kb on - strand, within MIT1002_02796at 3100.198 kb on - strand, within MIT1002_02796at 3100.198 kb on - strand, within MIT1002_02796at 3100.203 kb on - strand, within MIT1002_02796at 3100.256 kb on - strand, within MIT1002_02796at 3100.257 kb on - strand, within MIT1002_02796at 3100.339 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4
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3,099,417 - +1.2
3,099,681 + MIT1002_02795 0.54 -0.5
3,100,010 - -1.4
3,100,039 - MIT1002_02796 0.17 -2.5
3,100,057 - MIT1002_02796 0.22 -1.5
3,100,057 - MIT1002_02796 0.22 -0.4
3,100,110 - MIT1002_02796 0.37 -1.5
3,100,198 - MIT1002_02796 0.62 +1.2
3,100,198 - MIT1002_02796 0.62 -0.2
3,100,198 - MIT1002_02796 0.62 -3.1
3,100,198 - MIT1002_02796 0.62 +0.2
3,100,203 - MIT1002_02796 0.63 -2.1
3,100,256 - MIT1002_02796 0.78 -1.6
3,100,257 - MIT1002_02796 0.78 -0.9
3,100,339 - -0.5

Or see this region's nucleotide sequence