Experiment: monoculture; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_02759 and MIT1002_02760 are separated by 74 nucleotides MIT1002_02760 and MIT1002_02761 are separated by 98 nucleotides
MIT1002_02759: MIT1002_02759 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 3,065,409 to 3,066,683
_02759
MIT1002_02760: MIT1002_02760 - ATP-dependent Clp protease proteolytic subunit precursor, at 3,066,758 to 3,067,387
_02760
MIT1002_02761: MIT1002_02761 - Trigger factor, at 3,067,486 to 3,068,790
_02761
Position (kb)
3066
3067
3068 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3065.763 kb on - strand, within MIT1002_02759 at 3066.302 kb on + strand, within MIT1002_02759 at 3066.353 kb on + strand, within MIT1002_02759 at 3066.389 kb on - strand, within MIT1002_02759 at 3066.487 kb on + strand, within MIT1002_02759 at 3066.552 kb on + strand, within MIT1002_02759 at 3066.753 kb on + strand at 3066.809 kb on + strand at 3066.834 kb on - strand, within MIT1002_02760 at 3066.842 kb on - strand, within MIT1002_02760 at 3066.886 kb on - strand, within MIT1002_02760 at 3066.886 kb on - strand, within MIT1002_02760 at 3066.886 kb on - strand, within MIT1002_02760 at 3066.896 kb on - strand, within MIT1002_02760 at 3067.041 kb on + strand, within MIT1002_02760 at 3067.086 kb on - strand, within MIT1002_02760 at 3067.100 kb on - strand, within MIT1002_02760 at 3067.320 kb on + strand, within MIT1002_02760 at 3067.440 kb on - strand at 3067.440 kb on - strand at 3067.448 kb on - strand at 3067.506 kb on - strand at 3068.067 kb on - strand, within MIT1002_02761 at 3068.102 kb on + strand, within MIT1002_02761 at 3068.371 kb on - strand, within MIT1002_02761
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4 remove 3,065,763 - MIT1002_02759 0.28 -3.0 3,066,302 + MIT1002_02759 0.70 -0.8 3,066,353 + MIT1002_02759 0.74 -0.2 3,066,389 - MIT1002_02759 0.77 -2.7 3,066,487 + MIT1002_02759 0.85 -1.5 3,066,552 + MIT1002_02759 0.90 -1.1 3,066,753 + +0.0 3,066,809 + -3.3 3,066,834 - MIT1002_02760 0.12 -1.2 3,066,842 - MIT1002_02760 0.13 -1.2 3,066,886 - MIT1002_02760 0.20 +0.5 3,066,886 - MIT1002_02760 0.20 -2.4 3,066,886 - MIT1002_02760 0.20 -2.7 3,066,896 - MIT1002_02760 0.22 -1.7 3,067,041 + MIT1002_02760 0.45 -3.4 3,067,086 - MIT1002_02760 0.52 -2.5 3,067,100 - MIT1002_02760 0.54 +0.3 3,067,320 + MIT1002_02760 0.89 -2.0 3,067,440 - -1.5 3,067,440 - -0.2 3,067,448 - -0.1 3,067,506 - +0.4 3,068,067 - MIT1002_02761 0.45 +0.3 3,068,102 + MIT1002_02761 0.47 +0.1 3,068,371 - MIT1002_02761 0.68 +2.5
Or see this region's nucleotide sequence