Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02499

Experiment: monoculture; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 4
2,786,207	-		MIT1002_02497	0.38	-0.7
2,786,224	+		MIT1002_02497	0.42	+2.2
2,786,224	+		MIT1002_02497	0.42	-0.2
2,786,224	+		MIT1002_02497	0.42	-1.0
2,786,232	-		MIT1002_02497	0.44	+0.5
2,786,232	-		MIT1002_02497	0.44	-2.2
2,786,234	+		MIT1002_02497	0.44	+1.4
2,786,259	+		MIT1002_02497	0.50	-1.1
2,786,275	-		MIT1002_02497	0.54	+0.3
2,786,285	-		MIT1002_02497	0.56	+0.1
2,786,357	-		MIT1002_02497	0.73	+0.1
2,786,511	+				-0.9
2,786,519	-				+1.9
2,786,530	+				+0.2
2,786,536	-		MIT1002_02498	0.10	-0.7
2,786,540	+		MIT1002_02498	0.11	+0.2
2,786,541	+		MIT1002_02498	0.11	-1.3
2,786,651	+		MIT1002_02498	0.37	+0.5
2,786,651	+		MIT1002_02498	0.37	-1.3
2,786,651	-		MIT1002_02498	0.37	+0.1
2,786,656	-		MIT1002_02498	0.38	-0.4
2,786,659	-		MIT1002_02498	0.39	-0.3
2,786,668	-		MIT1002_02498	0.41	+0.4
2,786,680	-		MIT1002_02498	0.43	+0.7
2,786,682	+		MIT1002_02498	0.44	+0.8
2,786,684	+		MIT1002_02498	0.44	+0.1
2,786,687	+		MIT1002_02498	0.45	-0.2
2,786,687	+		MIT1002_02498	0.45	-0.0
2,786,690	-		MIT1002_02498	0.46	+0.7
2,786,690	-		MIT1002_02498	0.46	+1.4
2,786,695	-		MIT1002_02498	0.47	+2.0
2,786,695	-		MIT1002_02498	0.47	-0.1
2,786,760	+		MIT1002_02498	0.62	-0.8
2,786,824	-		MIT1002_02498	0.77	+0.1
2,786,828	+		MIT1002_02498	0.77	-1.0
2,786,836	-		MIT1002_02498	0.79	+0.0
2,786,850	+		MIT1002_02498	0.83	+1.2
2,786,851	+		MIT1002_02498	0.83	+1.2
2,786,851	+		MIT1002_02498	0.83	+0.1
2,786,859	-		MIT1002_02498	0.85	-0.9
2,786,961	+				-1.2
2,787,048	+				-0.3
2,787,122	+				+0.1
2,787,161	-				-0.9
2,787,201	+				-0.4
2,787,201	+				+0.3
2,787,203	+				+0.5
2,787,209	-				+0.2
2,787,257	+				+0.2
2,787,332	-				-0.3
2,787,345	+		MIT1002_02499	0.10	+0.8
2,787,353	+		MIT1002_02499	0.11	-0.8
2,787,361	-		MIT1002_02499	0.11	+1.7
2,787,361	-		MIT1002_02499	0.11	+1.1
2,787,361	-		MIT1002_02499	0.11	+1.1
2,787,427	-		MIT1002_02499	0.14	+0.4
2,787,427	-		MIT1002_02499	0.14	+0.2
2,787,432	-		MIT1002_02499	0.15	+0.2
2,787,434	-		MIT1002_02499	0.15	-3.6
2,787,451	+		MIT1002_02499	0.16	-0.6
2,787,459	-		MIT1002_02499	0.16	-1.0
2,787,459	-		MIT1002_02499	0.16	-1.0
2,787,459	-		MIT1002_02499	0.16	-0.5
2,787,513	+		MIT1002_02499	0.19	-0.3
2,787,513	+		MIT1002_02499	0.19	-0.3
2,787,586	-		MIT1002_02499	0.22	-1.5
2,787,628	-		MIT1002_02499	0.24	-0.2
2,787,630	+		MIT1002_02499	0.24	-0.2
2,787,660	-		MIT1002_02499	0.26	-0.9
2,787,748	-		MIT1002_02499	0.30	-0.6
2,787,824	-		MIT1002_02499	0.34	+0.0
2,787,901	-		MIT1002_02499	0.38	+0.2
2,787,901	-		MIT1002_02499	0.38	-0.9
2,788,039	+		MIT1002_02499	0.45	+0.3
2,788,050	+		MIT1002_02499	0.45	+1.4
2,788,050	+		MIT1002_02499	0.45	-0.5
2,788,086	+		MIT1002_02499	0.47	-0.5
2,788,101	+		MIT1002_02499	0.48	+0.2
2,788,128	-		MIT1002_02499	0.49	-1.2
2,788,143	+		MIT1002_02499	0.50	+0.4
2,788,218	+		MIT1002_02499	0.54	-0.7
2,788,257	-		MIT1002_02499	0.56	+2.0
2,788,298	+		MIT1002_02499	0.58	+0.4
2,788,438	+		MIT1002_02499	0.65	+0.6
2,788,602	+		MIT1002_02499	0.73	-0.7
2,788,610	-		MIT1002_02499	0.73	+0.4
2,788,610	-		MIT1002_02499	0.73	-0.0
2,788,656	-		MIT1002_02499	0.76	+0.9
2,788,756	+		MIT1002_02499	0.81	-0.3
2,788,787	-		MIT1002_02499	0.82	+0.1
2,788,810	+		MIT1002_02499	0.83	-0.3
2,788,972	+				-2.0
2,788,972	+				-0.3
2,788,981	-				+0.5
2,789,025	+				-2.5
2,789,254	-				-0.3
2,789,271	-				+0.2
2,789,280	-				-0.5