Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02453

Experiment: monoculture; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 4
2,737,227	+		MIT1002_02451	0.81	+1.6
2,737,261	-		MIT1002_02451	0.85	-0.1
2,737,261	-		MIT1002_02451	0.85	+0.6
2,737,294	-		MIT1002_02451	0.89	-0.1
2,737,324	-				+1.5
2,737,353	+				-1.5
2,737,361	-				+1.2
2,737,485	+				+0.5
2,737,485	+				-0.3
2,737,493	-				+0.6
2,737,500	+				-1.2
2,737,631	-		MIT1002_02452	0.20	-0.8
2,737,644	+		MIT1002_02452	0.22	-0.6
2,737,722	-		MIT1002_02452	0.35	-0.8
2,737,726	+		MIT1002_02452	0.35	-0.9
2,737,726	+		MIT1002_02452	0.35	+0.5
2,737,726	+		MIT1002_02452	0.35	+0.1
2,737,726	+		MIT1002_02452	0.35	-0.5
2,737,726	+		MIT1002_02452	0.35	+0.9
2,737,734	-		MIT1002_02452	0.37	+0.7
2,737,734	-		MIT1002_02452	0.37	+1.1
2,737,781	-		MIT1002_02452	0.44	+0.8
2,737,837	+		MIT1002_02452	0.53	+0.2
2,737,965	+		MIT1002_02452	0.74	+0.5
2,738,133	+				+2.2
2,738,141	-				+2.8
2,738,141	-				+0.7
2,738,141	-				-2.7
2,738,158	-				+0.8
2,738,200	-				+0.0
2,738,225	+				-0.6
2,738,231	-				+0.9
2,738,231	-				-0.6
2,738,233	-				-0.1
2,738,267	+				-0.3
2,738,283	+				-0.6
2,738,438	-				+0.2
2,738,483	+				-2.4
2,738,483	-				+1.3
2,738,539	-		MIT1002_02453	0.10	+0.1
2,738,599	+		MIT1002_02453	0.12	-0.1
2,738,690	+		MIT1002_02453	0.14	-0.1
2,738,700	+		MIT1002_02453	0.14	+1.2
2,738,708	-		MIT1002_02453	0.14	-1.2
2,738,731	+		MIT1002_02453	0.15	+0.4
2,738,757	+		MIT1002_02453	0.16	-1.4
2,738,757	+		MIT1002_02453	0.16	-0.6
2,738,789	+		MIT1002_02453	0.16	+2.2
2,738,825	+		MIT1002_02453	0.17	+0.5
2,738,890	+		MIT1002_02453	0.19	-2.1
2,738,934	+		MIT1002_02453	0.20	+0.2
2,738,934	+		MIT1002_02453	0.20	+0.3
2,739,019	+		MIT1002_02453	0.22	+0.4
2,739,026	-		MIT1002_02453	0.22	+1.4
2,739,026	-		MIT1002_02453	0.22	+0.1
2,739,107	+		MIT1002_02453	0.24	+0.8
2,739,125	-		MIT1002_02453	0.25	-0.4
2,739,127	-		MIT1002_02453	0.25	+0.1
2,739,239	+		MIT1002_02453	0.28	+0.2
2,739,282	+		MIT1002_02453	0.29	+0.4
2,739,300	-		MIT1002_02453	0.29	-0.3
2,739,300	-		MIT1002_02453	0.29	-1.4
2,739,300	-		MIT1002_02453	0.29	+1.2
2,739,362	+		MIT1002_02453	0.31	-1.2
2,739,362	+		MIT1002_02453	0.31	+0.5
2,739,362	+		MIT1002_02453	0.31	-0.2
2,739,362	+		MIT1002_02453	0.31	-1.1
2,739,362	+		MIT1002_02453	0.31	+0.4
2,739,362	+		MIT1002_02453	0.31	-1.0
2,739,368	-		MIT1002_02453	0.31	-0.4
2,739,368	-		MIT1002_02453	0.31	+0.2
2,739,370	-		MIT1002_02453	0.31	-1.3
2,739,370	-		MIT1002_02453	0.31	+0.3
2,739,380	+		MIT1002_02453	0.31	+1.0
2,739,380	+		MIT1002_02453	0.31	+1.3
2,739,388	-		MIT1002_02453	0.31	-1.6
2,739,414	-		MIT1002_02453	0.32	-0.6
2,739,426	-		MIT1002_02453	0.32	-1.4
2,739,529	-		MIT1002_02453	0.35	+0.0
2,739,611	+		MIT1002_02453	0.37	-1.0
2,739,645	-		MIT1002_02453	0.38	+0.0
2,739,666	-		MIT1002_02453	0.38	+1.8
2,739,722	-		MIT1002_02453	0.40	+1.5
2,739,795	+		MIT1002_02453	0.41	-0.6
2,739,864	-		MIT1002_02453	0.43	+0.6
2,739,879	-		MIT1002_02453	0.44	+0.5
2,739,881	-		MIT1002_02453	0.44	+0.4
2,739,939	-		MIT1002_02453	0.45	-1.8
2,739,993	+		MIT1002_02453	0.46	+0.4
2,739,994	+		MIT1002_02453	0.46	+3.1
2,740,001	-		MIT1002_02453	0.47	-0.2
2,740,008	+		MIT1002_02453	0.47	-0.6
2,740,016	-		MIT1002_02453	0.47	+0.9
2,740,043	+		MIT1002_02453	0.48	+0.5
2,740,058	+		MIT1002_02453	0.48	-0.2
2,740,095	-		MIT1002_02453	0.49	-0.9
2,740,149	+		MIT1002_02453	0.50	-0.5
2,740,149	+		MIT1002_02453	0.50	+0.4
2,740,174	-		MIT1002_02453	0.51	-0.8
2,740,280	+		MIT1002_02453	0.54	+0.5
2,740,298	-		MIT1002_02453	0.54	+1.9
2,740,415	+		MIT1002_02453	0.57	-0.4
2,740,505	+		MIT1002_02453	0.59	-1.2
2,740,590	+		MIT1002_02453	0.61	-0.2
2,740,638	+		MIT1002_02453	0.62	-3.6
2,740,654	+		MIT1002_02453	0.63	-0.8
2,740,739	+		MIT1002_02453	0.65	+1.2
2,740,747	-		MIT1002_02453	0.65	-0.2
2,740,837	-		MIT1002_02453	0.67	+0.1
2,740,848	+		MIT1002_02453	0.68	-0.3
2,740,936	+		MIT1002_02453	0.70	-1.0
2,740,954	-		MIT1002_02453	0.70	-0.2
2,740,979	-		MIT1002_02453	0.71	+0.1
2,741,061	+		MIT1002_02453	0.73	+0.3
2,741,066	+		MIT1002_02453	0.73	+0.4
2,741,081	+		MIT1002_02453	0.73	-1.0
2,741,081	+		MIT1002_02453	0.73	-0.1
2,741,164	+		MIT1002_02453	0.76	-0.2
2,741,245	+		MIT1002_02453	0.78	+0.5
2,741,245	+		MIT1002_02453	0.78	-0.3
2,741,245	+		MIT1002_02453	0.78	+0.5
2,741,245	+		MIT1002_02453	0.78	+0.4
2,741,245	+		MIT1002_02453	0.78	+0.4
2,741,247	+		MIT1002_02453	0.78	+0.0
2,741,251	-		MIT1002_02453	0.78	-1.3
2,741,253	-		MIT1002_02453	0.78	-0.1
2,741,253	-		MIT1002_02453	0.78	+0.5
2,741,253	-		MIT1002_02453	0.78	-0.2
2,741,272	+		MIT1002_02453	0.78	-0.6
2,741,361	+		MIT1002_02453	0.80	+0.5
2,741,361	+		MIT1002_02453	0.80	+1.0
2,741,361	+		MIT1002_02453	0.80	+0.1
2,741,369	-		MIT1002_02453	0.81	+0.5
2,741,369	-		MIT1002_02453	0.81	+0.2
2,741,369	-		MIT1002_02453	0.81	+1.6
2,741,371	+		MIT1002_02453	0.81	-0.4
2,741,386	-		MIT1002_02453	0.81	-0.7
2,741,405	+		MIT1002_02453	0.82	-1.0
2,741,479	-		MIT1002_02453	0.83	+0.1
2,741,512	-		MIT1002_02453	0.84	+1.3
2,741,534	+		MIT1002_02453	0.85	-0.1
2,741,602	-		MIT1002_02453	0.86	+0.4
2,741,602	-		MIT1002_02453	0.86	+0.3
2,741,621	-		MIT1002_02453	0.87	+0.9
2,741,638	-		MIT1002_02453	0.87	-1.3
2,741,705	+		MIT1002_02453	0.89	-0.0
2,741,813	+				+0.2
2,741,870	+				-0.8
2,741,910	+				+0.6
2,741,972	-				+0.4
2,741,972	-				-0.4
2,741,980	+				-0.4
2,742,063	-				-0.3
2,742,078	-				+0.4
2,742,118	-				-0.2
2,742,124	+				+0.3
2,742,132	-				-0.4
2,742,132	-				+1.0
2,742,465	-				-0.2
2,742,503	+				+1.4
2,742,511	-				+0.6
2,742,546	+				+0.6
2,742,546	+				-0.3
2,742,546	+				-1.4
2,742,554	-				+1.2
2,742,554	-				+0.1
2,742,620	+				-0.8
2,742,747	+		MIT1002_02454	0.10	-0.7
2,742,872	+		MIT1002_02454	0.15	+0.7
2,742,875	-		MIT1002_02454	0.15	+1.4
2,742,880	-		MIT1002_02454	0.15	+0.8
2,742,887	+		MIT1002_02454	0.15	+1.7
2,742,895	-		MIT1002_02454	0.16	-0.7
2,742,932	+		MIT1002_02454	0.17	+1.0
2,742,940	-		MIT1002_02454	0.17	-0.6
2,743,024	-		MIT1002_02454	0.20	-1.7
2,743,078	+		MIT1002_02454	0.23	-0.7
2,743,078	+		MIT1002_02454	0.23	+0.1
2,743,096	-		MIT1002_02454	0.23	-0.0
2,743,119	+		MIT1002_02454	0.24	+0.6
2,743,133	+		MIT1002_02454	0.25	+0.6
2,743,133	+		MIT1002_02454	0.25	+0.1
2,743,138	+		MIT1002_02454	0.25	-1.6
2,743,141	-		MIT1002_02454	0.25	-0.6
2,743,141	-		MIT1002_02454	0.25	+0.5
2,743,141	-		MIT1002_02454	0.25	-0.3