Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02331

Experiment: monoculture; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 4
2,597,303	-		MIT1002_02329	0.26	+0.6
2,597,405	+		MIT1002_02329	0.48	+0.6
2,597,414	-		MIT1002_02329	0.50	-0.6
2,597,415	+		MIT1002_02329	0.50	-0.4
2,597,423	-		MIT1002_02329	0.51	+0.8
2,597,423	-		MIT1002_02329	0.51	-0.4
2,597,436	+		MIT1002_02329	0.54	-0.1
2,597,460	-		MIT1002_02329	0.59	-0.3
2,597,460	-		MIT1002_02329	0.59	-1.9
2,597,463	+		MIT1002_02329	0.60	+3.3
2,597,483	-		MIT1002_02329	0.64	-0.2
2,597,487	+		MIT1002_02329	0.65	-0.4
2,597,648	+				-0.6
2,597,648	-				+2.0
2,597,650	+				+0.4
2,597,655	+				-1.2
2,597,687	+				+0.1
2,597,695	-				-0.1
2,597,695	-				-0.8
2,597,744	+		MIT1002_02330	0.18	+0.3
2,597,747	+		MIT1002_02330	0.19	+0.9
2,597,747	+		MIT1002_02330	0.19	+0.2
2,597,752	-		MIT1002_02330	0.20	-0.7
2,597,754	-		MIT1002_02330	0.20	-2.1
2,597,754	-		MIT1002_02330	0.20	-0.7
2,597,755	-		MIT1002_02330	0.20	+2.2
2,597,755	-		MIT1002_02330	0.20	+0.4
2,597,798	-		MIT1002_02330	0.29	+0.2
2,597,798	-		MIT1002_02330	0.29	-0.4
2,597,798	-		MIT1002_02330	0.29	+0.1
2,597,798	-		MIT1002_02330	0.29	-0.9
2,597,829	-		MIT1002_02330	0.35	-0.2
2,597,893	+		MIT1002_02330	0.48	-1.0
2,597,893	+		MIT1002_02330	0.48	+0.8
2,597,930	-		MIT1002_02330	0.55	-0.6
2,597,949	-		MIT1002_02330	0.59	+0.1
2,598,038	+		MIT1002_02330	0.76	+0.8
2,598,038	+		MIT1002_02330	0.76	+0.2
2,598,038	+		MIT1002_02330	0.76	+0.6
2,598,046	-		MIT1002_02330	0.78	-1.3
2,598,077	+		MIT1002_02330	0.84	-0.1
2,598,132	+				+1.4
2,598,132	+				-0.7
2,598,281	-				-1.4
2,598,349	+				+0.2
2,598,359	+				-2.2
2,598,425	+		MIT1002_02331	0.18	-1.6
2,598,433	-		MIT1002_02331	0.19	-1.4
2,598,433	-		MIT1002_02331	0.19	+0.0
2,598,433	-		MIT1002_02331	0.19	+0.6
2,598,440	-		MIT1002_02331	0.20	-1.0
2,598,445	+		MIT1002_02331	0.21	-0.3
2,598,455	+		MIT1002_02331	0.22	-0.3
2,598,455	+		MIT1002_02331	0.22	-3.8
2,598,455	+		MIT1002_02331	0.22	-0.2
2,598,455	+		MIT1002_02331	0.22	-0.5
2,598,455	+		MIT1002_02331	0.22	-0.1
2,598,455	+		MIT1002_02331	0.22	+1.9
2,598,455	+		MIT1002_02331	0.22	+0.2
2,598,455	+		MIT1002_02331	0.22	-0.6
2,598,455	+		MIT1002_02331	0.22	+0.1
2,598,455	+		MIT1002_02331	0.22	-1.0
2,598,455	+		MIT1002_02331	0.22	+0.1
2,598,455	+		MIT1002_02331	0.22	-0.3
2,598,463	-		MIT1002_02331	0.23	-1.9
2,598,463	-		MIT1002_02331	0.23	+0.3
2,598,463	-		MIT1002_02331	0.23	-0.6
2,598,463	-		MIT1002_02331	0.23	+0.1
2,598,463	-		MIT1002_02331	0.23	-1.5
2,598,463	-		MIT1002_02331	0.23	+1.2
2,598,463	-		MIT1002_02331	0.23	-0.8
2,598,463	-		MIT1002_02331	0.23	-0.0
2,598,463	-		MIT1002_02331	0.23	-0.3
2,598,463	-		MIT1002_02331	0.23	+0.4
2,598,463	-		MIT1002_02331	0.23	+1.9
2,598,463	-		MIT1002_02331	0.23	-1.4
2,598,463	-		MIT1002_02331	0.23	-0.4
2,598,481	+		MIT1002_02331	0.26	-0.4
2,598,481	+		MIT1002_02331	0.26	-0.8
2,598,639	-		MIT1002_02331	0.46	+0.3
2,598,655	-		MIT1002_02331	0.48	-2.3
2,598,666	-		MIT1002_02331	0.50	-0.8
2,598,698	+		MIT1002_02331	0.54	-0.2
2,598,738	+		MIT1002_02331	0.59	-0.8
2,598,861	-		MIT1002_02331	0.75	-0.9
2,598,882	-		MIT1002_02331	0.78	+1.9
2,598,882	-		MIT1002_02331	0.78	+0.4
2,598,910	+		MIT1002_02331	0.81	+0.8
2,599,017	+				-1.3
2,599,017	+				+0.3
2,599,017	+				-1.2
2,599,017	+				-0.7
2,599,024	+				+1.1
2,599,024	+				-0.1
2,599,025	-				-0.9
2,599,025	-				+0.4
2,599,097	-				+0.6
2,599,191	+				+0.9
2,599,313	+		MIT1002_02332	0.15	+0.4
2,599,331	-		MIT1002_02332	0.17	-0.0
2,599,371	-		MIT1002_02332	0.20	-0.3
2,599,409	+		MIT1002_02332	0.24	-0.6
2,599,410	+		MIT1002_02332	0.24	+1.3
2,599,413	-		MIT1002_02332	0.24	-0.6
2,599,413	-		MIT1002_02332	0.24	-1.4
2,599,418	-		MIT1002_02332	0.24	-0.5
2,599,427	+		MIT1002_02332	0.25	+0.0
2,599,427	+		MIT1002_02332	0.25	+1.2
2,599,450	-		MIT1002_02332	0.27	-0.3
2,599,486	-		MIT1002_02332	0.30	+0.2
2,599,584	-		MIT1002_02332	0.39	-0.3
2,599,676	+		MIT1002_02332	0.47	+0.1
2,599,676	+		MIT1002_02332	0.47	-0.3
2,599,676	+		MIT1002_02332	0.47	-2.1
2,599,709	+		MIT1002_02332	0.50	-0.3
2,599,717	-		MIT1002_02332	0.51	-0.5
2,599,727	-		MIT1002_02332	0.52	-0.1
2,599,729	+		MIT1002_02332	0.52	+0.1
2,599,775	+		MIT1002_02332	0.56	+2.2
2,599,783	-		MIT1002_02332	0.57	+0.6
2,599,797	+		MIT1002_02332	0.58	-0.4
2,599,811	+		MIT1002_02332	0.60	+1.5
2,599,819	-		MIT1002_02332	0.60	-0.4
2,599,851	+		MIT1002_02332	0.63	-1.4
2,599,895	-		MIT1002_02332	0.67	-0.2
2,599,895	-		MIT1002_02332	0.67	-0.1
2,599,921	-		MIT1002_02332	0.69	-0.9
2,599,959	-		MIT1002_02332	0.73	-2.3
2,599,959	-		MIT1002_02332	0.73	-1.0
2,599,992	+		MIT1002_02332	0.76	+0.4
2,600,007	-		MIT1002_02332	0.77	+0.7
2,600,023	+		MIT1002_02332	0.78	+0.7
2,600,031	-		MIT1002_02332	0.79	-1.0
2,600,031	-		MIT1002_02332	0.79	-0.3