Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02249

Experiment: monoculture; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 4
2,506,035	-				-1.1
2,506,037	+				+0.3
2,506,059	-				-1.5
2,506,060	-				-1.1
2,506,074	-				-1.3
2,506,165	+				+2.8
2,506,258	+		MIT1002_02246	0.77	-0.4
2,506,263	-		MIT1002_02246	0.82	-0.6
2,506,277	+				+0.2
2,506,277	+				+1.9
2,506,277	+				-2.0
2,506,277	+				+0.8
2,506,285	-				-0.6
2,506,285	-				+0.7
2,506,285	-				+0.4
2,506,285	-				-0.1
2,506,285	-				+0.7
2,506,285	-				-1.0
2,506,285	-				-0.4
2,506,285	-				+1.2
2,506,287	+				-0.2
2,506,295	-				+1.7
2,506,295	-				-2.4
2,506,368	+		MIT1002_02247	0.43	+0.0
2,506,381	-		MIT1002_02247	0.50	+0.5
2,506,444	-		MIT1002_02247	0.86	+0.1
2,506,462	-				-0.0
2,506,486	+				+0.2
2,506,493	+				+1.4
2,506,504	+				+0.5
2,506,512	-				+1.7
2,506,522	-				+1.4
2,506,537	+				-0.4
2,506,562	-				+2.6
2,506,680	-		MIT1002_02248	0.35	-0.5
2,506,714	+		MIT1002_02248	0.47	-1.6
2,506,724	+		MIT1002_02248	0.51	+0.6
2,506,756	+		MIT1002_02248	0.63	+0.4
2,506,781	-		MIT1002_02248	0.72	-0.0
2,506,861	+				+0.2
2,506,924	+				+0.7
2,506,950	+				-0.6
2,507,123	-		MIT1002_02249	0.33	+0.0
2,507,138	+		MIT1002_02249	0.37	-0.3
2,507,190	-		MIT1002_02249	0.52	-0.9
2,507,266	-		MIT1002_02249	0.74	-0.6
2,507,307	-		MIT1002_02249	0.85	-0.2
2,507,317	+		MIT1002_02249	0.88	-0.7
2,507,324	+				+0.5
2,507,324	+				-0.4
2,507,385	-				+1.1
2,507,433	+				-1.3
2,507,433	+				+0.1
2,507,444	+				+0.6
2,507,444	+				+0.6
2,507,452	-				-0.1
2,507,456	+				+1.4
2,507,519	-				+1.4
2,507,520	-		MIT1002_02250	0.10	-2.6
2,507,651	+		MIT1002_02250	0.42	-2.4
2,507,688	+		MIT1002_02250	0.51	+0.1
2,507,723	-		MIT1002_02250	0.59	+0.2
2,507,776	-		MIT1002_02250	0.72	-1.1
2,507,807	+		MIT1002_02250	0.80	-0.1
2,507,807	+		MIT1002_02250	0.80	+1.0
2,507,825	+		MIT1002_02250	0.84	-0.3
2,507,825	+		MIT1002_02250	0.84	+1.0
2,507,833	-		MIT1002_02250	0.86	-3.0
2,507,857	+				-0.7
2,507,857	+				-0.0
2,507,865	-				-0.0
2,507,865	-				-0.3
2,507,868	+				+0.9
2,507,876	-				+0.6
2,507,876	-				-2.4
2,507,876	-				+0.2
2,507,919	+				+0.5
2,507,968	-				-0.4
2,507,985	-				-0.4
2,508,056	+		MIT1002_02251	0.13	+0.2
2,508,175	+		MIT1002_02251	0.46	-0.1
2,508,192	-		MIT1002_02251	0.51	-1.1
2,508,243	+		MIT1002_02251	0.64	+1.1
2,508,243	+		MIT1002_02251	0.64	-0.1
2,508,243	+		MIT1002_02251	0.64	+0.1
2,508,243	+		MIT1002_02251	0.64	+0.6
2,508,251	-		MIT1002_02251	0.67	-1.4
2,508,251	-		MIT1002_02251	0.67	-0.1
2,508,251	-		MIT1002_02251	0.67	-0.3
2,508,251	-		MIT1002_02251	0.67	-0.4
2,508,251	-		MIT1002_02251	0.67	+1.9
2,508,253	+		MIT1002_02251	0.67	-1.0
2,508,283	+		MIT1002_02251	0.75	+0.2