Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01929

Experiment: monoculture; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01928 and MIT1002_01929 are separated by 5 nucleotidesMIT1002_01929 and MIT1002_01930 are separated by 42 nucleotidesMIT1002_01930 and MIT1002_01931 are separated by 131 nucleotides MIT1002_01928: MIT1002_01928 - Tetraacyldisaccharide 4'-kinase, at 2,142,782 to 2,143,813 _01928 MIT1002_01929: MIT1002_01929 - Trm112p-like protein, at 2,143,819 to 2,144,013 _01929 MIT1002_01930: MIT1002_01930 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 2,144,056 to 2,144,805 _01930 MIT1002_01931: MIT1002_01931 - C signal, at 2,144,937 to 2,145,596 _01931 Position (kb) 2143 2144 2145Strain fitness (log2 ratio) -3 -2 -1 0 1at 2143.900 kb on + strand, within MIT1002_01929at 2144.782 kb on - strandat 2144.916 kb on - strandat 2144.950 kb on - strandat 2144.960 kb on + strandat 2144.967 kb on + strandat 2144.975 kb on - strandat 2144.975 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4
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2,143,900 + MIT1002_01929 0.42 -2.9
2,144,782 - +0.6
2,144,916 - -0.4
2,144,950 - +1.0
2,144,960 + -0.8
2,144,967 + +0.7
2,144,975 - +0.3
2,144,975 - +0.4

Or see this region's nucleotide sequence