Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01529

Experiment: monoculture; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 4
1,678,099	+		MIT1002_01528	0.56	-0.2
1,678,107	-		MIT1002_01528	0.56	+0.1
1,678,121	-		MIT1002_01528	0.57	+0.1
1,678,124	+		MIT1002_01528	0.57	+0.3
1,678,133	+		MIT1002_01528	0.58	+1.7
1,678,133	+		MIT1002_01528	0.58	-0.3
1,678,133	+		MIT1002_01528	0.58	+1.3
1,678,133	+		MIT1002_01528	0.58	+0.1
1,678,144	-		MIT1002_01528	0.58	-1.7
1,678,245	+		MIT1002_01528	0.64	+0.0
1,678,331	-		MIT1002_01528	0.68	-0.3
1,678,377	-		MIT1002_01528	0.71	-0.2
1,678,377	-		MIT1002_01528	0.71	+0.8
1,678,382	-		MIT1002_01528	0.71	+0.2
1,678,390	+		MIT1002_01528	0.71	-0.6
1,678,482	-		MIT1002_01528	0.76	-2.0
1,678,542	-		MIT1002_01528	0.79	-0.4
1,678,577	-		MIT1002_01528	0.81	+1.0
1,678,590	-		MIT1002_01528	0.82	-0.6
1,678,613	+		MIT1002_01528	0.83	-0.0
1,678,631	+		MIT1002_01528	0.84	-0.4
1,678,631	+		MIT1002_01528	0.84	-0.2
1,678,639	-		MIT1002_01528	0.84	+0.2
1,678,639	-		MIT1002_01528	0.84	-0.6
1,678,639	-		MIT1002_01528	0.84	+0.5
1,678,639	-		MIT1002_01528	0.84	-0.9
1,678,639	-		MIT1002_01528	0.84	+0.3
1,678,675	+		MIT1002_01528	0.86	-0.2
1,678,683	-		MIT1002_01528	0.87	+0.8
1,678,683	-		MIT1002_01528	0.87	-0.4
1,678,711	-		MIT1002_01528	0.88	-0.7
1,678,721	-		MIT1002_01528	0.89	-2.9
1,678,765	+				-0.1
1,678,783	-				-0.6
1,678,947	+				+0.5
1,679,028	-				-1.5
1,679,043	-				-1.8
1,679,100	-				-0.7
1,679,106	+				+0.0
1,679,114	-				-0.2
1,679,141	+				+0.7
1,679,141	+				-0.4
1,679,143	+				+1.0
1,679,146	-				+1.3
1,679,146	-				+0.5
1,679,149	+				+0.3
1,679,156	-		MIT1002_01529	0.11	+1.3
1,679,229	-		MIT1002_01529	0.19	-0.5
1,679,229	-		MIT1002_01529	0.19	+0.1
1,679,275	+		MIT1002_01529	0.25	+0.2
1,679,303	+		MIT1002_01529	0.28	+2.9
1,679,332	+		MIT1002_01529	0.31	-1.3
1,679,443	+		MIT1002_01529	0.45	-2.1
1,679,443	+		MIT1002_01529	0.45	+0.3
1,679,448	+		MIT1002_01529	0.45	-0.3
1,679,453	+		MIT1002_01529	0.46	-0.0
1,679,470	+		MIT1002_01529	0.48	+0.1
1,679,693	-		MIT1002_01529	0.74	-0.1
1,679,707	-		MIT1002_01529	0.76	-1.0
1,679,725	+		MIT1002_01529	0.78	+0.1
1,679,725	+		MIT1002_01529	0.78	+0.2
1,679,725	+		MIT1002_01529	0.78	-0.3
1,679,725	+		MIT1002_01529	0.78	-0.5
1,679,725	+		MIT1002_01529	0.78	-0.8
1,679,733	-		MIT1002_01529	0.79	-0.3
1,679,733	-		MIT1002_01529	0.79	-1.0
1,679,824	+		MIT1002_01529	0.89	-0.0
1,679,824	+		MIT1002_01529	0.89	+0.7
1,679,878	-				-1.0
1,679,909	+				-1.4
1,679,933	-				-0.0
1,679,944	+				+0.2
1,680,009	-				+1.3
1,680,094	-				+0.2
1,680,099	+				-0.5
1,680,100	-				-1.5
1,680,107	-				-0.4
1,680,294	-				-2.5
1,680,307	+				-0.3
1,680,317	+				+0.4
1,680,317	+				+0.1
1,680,323	-				+0.6
1,680,325	-				-1.3
1,680,464	+				-0.5
1,680,499	+				+2.4
1,680,499	+				-0.3
1,680,592	-		MIT1002_01530	0.12	+0.6
1,680,709	-		MIT1002_01530	0.17	-0.6
1,680,719	-		MIT1002_01530	0.18	-0.3
1,680,791	+		MIT1002_01530	0.21	+10.1
1,680,791	+		MIT1002_01530	0.21	+0.3
1,680,799	-		MIT1002_01530	0.22	+0.5
1,680,866	+		MIT1002_01530	0.25	-0.3
1,680,866	+		MIT1002_01530	0.25	-0.3
1,680,867	+		MIT1002_01530	0.25	-1.0
1,680,874	-		MIT1002_01530	0.25	+0.3
1,680,874	-		MIT1002_01530	0.25	+1.8
1,680,874	-		MIT1002_01530	0.25	-0.4
1,680,893	+		MIT1002_01530	0.26	+0.1
1,680,900	+		MIT1002_01530	0.26	+1.0
1,680,900	+		MIT1002_01530	0.26	-1.3
1,680,908	-		MIT1002_01530	0.27	+0.3