Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01393

Experiment: monoculture; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 4
1,542,819	-		MIT1002_01391	0.62	+0.3
1,542,866	+		MIT1002_01391	0.66	+1.0
1,542,876	+		MIT1002_01391	0.67	+0.3
1,542,876	+		MIT1002_01391	0.67	-1.9
1,542,917	-		MIT1002_01391	0.70	+1.1
1,542,917	-		MIT1002_01391	0.70	+1.1
1,542,939	-		MIT1002_01391	0.71	-0.1
1,542,974	+		MIT1002_01391	0.74	-0.5
1,542,976	+		MIT1002_01391	0.74	-0.6
1,542,976	+		MIT1002_01391	0.74	+0.4
1,542,991	+		MIT1002_01391	0.75	+1.5
1,542,991	+		MIT1002_01391	0.75	+0.3
1,543,007	-		MIT1002_01391	0.76	+0.3
1,543,163	-		MIT1002_01391	0.88	+2.3
1,543,186	+		MIT1002_01391	0.89	+0.4
1,543,187	-		MIT1002_01391	0.89	-1.5
1,543,237	-				-0.4
1,543,333	-				-1.3
1,543,834	+		MIT1002_01393	0.54	-1.4
1,543,843	+		MIT1002_01393	0.58	-0.2
1,543,866	-		MIT1002_01393	0.69	-2.2
1,543,884	-		MIT1002_01393	0.77	+0.1
1,543,977	-				-0.5
1,543,992	-				-0.3
1,544,004	-				-1.1
1,544,004	-				-0.1
1,544,050	-				-0.7
1,544,080	+				+1.4
1,544,109	+				-0.3
1,544,109	+				-0.4
1,544,109	+				-2.2
1,544,109	+				-0.2
1,544,109	+				-0.2
1,544,109	+				-0.5
1,544,117	-		MIT1002_01394	0.10	-0.0
1,544,117	-		MIT1002_01394	0.10	+0.3
1,544,117	-		MIT1002_01394	0.10	+0.6
1,544,132	+		MIT1002_01394	0.11	-0.2
1,544,175	+		MIT1002_01394	0.13	-0.7
1,544,183	-		MIT1002_01394	0.14	+0.2
1,544,188	+		MIT1002_01394	0.14	-1.4
1,544,231	+		MIT1002_01394	0.16	+0.2
1,544,231	+		MIT1002_01394	0.16	-0.1
1,544,231	+		MIT1002_01394	0.16	+0.2
1,544,283	+		MIT1002_01394	0.19	-0.0
1,544,291	-		MIT1002_01394	0.20	+0.1
1,544,304	+		MIT1002_01394	0.20	+1.2
1,544,429	+		MIT1002_01394	0.27	+0.3
1,544,429	+		MIT1002_01394	0.27	+1.0
1,544,437	-		MIT1002_01394	0.28	-1.3
1,544,437	-		MIT1002_01394	0.28	+0.2
1,544,441	+		MIT1002_01394	0.28	-1.4
1,544,532	+		MIT1002_01394	0.33	-0.5
1,544,535	-		MIT1002_01394	0.33	-0.2
1,544,568	+		MIT1002_01394	0.35	-1.6
1,544,606	-		MIT1002_01394	0.37	+0.2
1,544,633	-		MIT1002_01394	0.38	+5.8
1,544,633	-		MIT1002_01394	0.38	-1.2
1,544,639	-		MIT1002_01394	0.39	-0.7
1,544,718	-		MIT1002_01394	0.43	-0.0
1,544,819	-		MIT1002_01394	0.49	+1.1
1,544,923	-		MIT1002_01394	0.54	+0.1