Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01228

Experiment: monoculture; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01226 and MIT1002_01227 are separated by 29 nucleotidesMIT1002_01227 and MIT1002_01228 are separated by 152 nucleotidesMIT1002_01228 and MIT1002_01229 are separated by 9 nucleotides MIT1002_01226: MIT1002_01226 - hypothetical protein, at 1,350,131 to 1,350,256 _01226 MIT1002_01227: MIT1002_01227 - recombination and DNA strand exchange inhibitor protein, at 1,350,286 to 1,350,936 _01227 MIT1002_01228: MIT1002_01228 - 50S ribosomal protein L3 glutamine methyltransferase, at 1,351,089 to 1,352,024 _01228 MIT1002_01229: MIT1002_01229 - Chorismate synthase, at 1,352,034 to 1,353,131 _01229 Position (kb) 1351 1352 1353Strain fitness (log2 ratio) -2 -1 0 1 2at 1350.183 kb on - strand, within MIT1002_01226at 1350.188 kb on - strand, within MIT1002_01226at 1350.227 kb on + strand, within MIT1002_01226at 1350.235 kb on - strand, within MIT1002_01226at 1350.245 kb on - strandat 1350.263 kb on + strandat 1350.273 kb on + strandat 1350.385 kb on + strand, within MIT1002_01227at 1350.424 kb on + strand, within MIT1002_01227at 1350.427 kb on - strand, within MIT1002_01227at 1350.449 kb on - strand, within MIT1002_01227at 1350.465 kb on + strand, within MIT1002_01227at 1350.519 kb on + strand, within MIT1002_01227at 1350.528 kb on - strand, within MIT1002_01227at 1350.528 kb on - strand, within MIT1002_01227at 1350.649 kb on - strand, within MIT1002_01227at 1350.649 kb on - strand, within MIT1002_01227at 1350.661 kb on + strand, within MIT1002_01227at 1350.755 kb on + strand, within MIT1002_01227at 1350.763 kb on - strand, within MIT1002_01227at 1350.773 kb on - strand, within MIT1002_01227at 1350.784 kb on + strand, within MIT1002_01227at 1350.784 kb on + strand, within MIT1002_01227at 1350.909 kb on - strandat 1350.916 kb on - strandat 1350.950 kb on + strandat 1351.023 kb on - strandat 1351.288 kb on + strand, within MIT1002_01228at 1351.373 kb on + strand, within MIT1002_01228at 1351.373 kb on + strand, within MIT1002_01228at 1351.417 kb on + strand, within MIT1002_01228at 1351.592 kb on + strand, within MIT1002_01228at 1351.642 kb on + strand, within MIT1002_01228at 1351.642 kb on + strand, within MIT1002_01228at 1351.745 kb on + strand, within MIT1002_01228at 1351.745 kb on + strand, within MIT1002_01228at 1351.745 kb on + strand, within MIT1002_01228at 1351.803 kb on + strand, within MIT1002_01228at 1351.803 kb on + strand, within MIT1002_01228at 1351.803 kb on + strand, within MIT1002_01228at 1351.813 kb on + strand, within MIT1002_01228

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4
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1,350,183 - MIT1002_01226 0.41 +0.4
1,350,188 - MIT1002_01226 0.45 -2.5
1,350,227 + MIT1002_01226 0.76 +0.3
1,350,235 - MIT1002_01226 0.83 -0.8
1,350,245 - +2.1
1,350,263 + +0.1
1,350,273 + -0.4
1,350,385 + MIT1002_01227 0.15 -0.7
1,350,424 + MIT1002_01227 0.21 +1.5
1,350,427 - MIT1002_01227 0.22 +1.9
1,350,449 - MIT1002_01227 0.25 -0.5
1,350,465 + MIT1002_01227 0.27 -1.2
1,350,519 + MIT1002_01227 0.36 -0.8
1,350,528 - MIT1002_01227 0.37 -0.5
1,350,528 - MIT1002_01227 0.37 -0.3
1,350,649 - MIT1002_01227 0.56 -1.8
1,350,649 - MIT1002_01227 0.56 +0.1
1,350,661 + MIT1002_01227 0.58 +1.5
1,350,755 + MIT1002_01227 0.72 -1.0
1,350,763 - MIT1002_01227 0.73 -0.1
1,350,773 - MIT1002_01227 0.75 +0.1
1,350,784 + MIT1002_01227 0.76 +0.5
1,350,784 + MIT1002_01227 0.76 -0.1
1,350,909 - -0.1
1,350,916 - -1.2
1,350,950 + +0.5
1,351,023 - +0.8
1,351,288 + MIT1002_01228 0.21 -0.5
1,351,373 + MIT1002_01228 0.30 +2.5
1,351,373 + MIT1002_01228 0.30 -2.0
1,351,417 + MIT1002_01228 0.35 -0.0
1,351,592 + MIT1002_01228 0.54 -0.3
1,351,642 + MIT1002_01228 0.59 +0.4
1,351,642 + MIT1002_01228 0.59 +0.1
1,351,745 + MIT1002_01228 0.70 +0.9
1,351,745 + MIT1002_01228 0.70 +0.9
1,351,745 + MIT1002_01228 0.70 -1.1
1,351,803 + MIT1002_01228 0.76 -2.1
1,351,803 + MIT1002_01228 0.76 +0.6
1,351,803 + MIT1002_01228 0.76 +1.5
1,351,813 + MIT1002_01228 0.77 +0.5

Or see this region's nucleotide sequence