Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01022

Experiment: monoculture; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 4
1,131,660	-		MIT1002_01021	0.20	+1.3
1,131,662	+		MIT1002_01021	0.20	-1.7
1,131,662	+		MIT1002_01021	0.20	+0.5
1,131,665	-		MIT1002_01021	0.20	-0.2
1,131,670	-		MIT1002_01021	0.21	-1.0
1,131,692	-		MIT1002_01021	0.23	-0.1
1,131,709	-		MIT1002_01021	0.25	+1.1
1,131,855	-		MIT1002_01021	0.42	+0.3
1,131,928	+		MIT1002_01021	0.50	-0.5
1,131,928	+		MIT1002_01021	0.50	+0.7
1,131,971	-		MIT1002_01021	0.54	-0.6
1,132,139	-		MIT1002_01021	0.73	-1.2
1,132,139	-		MIT1002_01021	0.73	+0.8
1,132,153	+		MIT1002_01021	0.75	-1.1
1,132,153	+		MIT1002_01021	0.75	-0.8
1,132,161	-		MIT1002_01021	0.76	-0.3
1,132,161	-		MIT1002_01021	0.76	+0.4
1,132,192	+		MIT1002_01021	0.79	-0.5
1,132,318	+				+0.1
1,132,318	+				-0.0
1,132,326	-				-0.9
1,132,352	-				+0.2
1,132,354	+				-0.8
1,132,354	+				+0.5
1,132,390	-				+0.1
1,132,432	+				-1.0
1,132,818	+				+0.2
1,132,916	-		MIT1002_01022	0.14	+0.7
1,132,938	+		MIT1002_01022	0.15	-0.2
1,132,946	-		MIT1002_01022	0.15	-0.6
1,132,948	-		MIT1002_01022	0.15	+0.0
1,132,956	-		MIT1002_01022	0.16	+0.7
1,133,025	+		MIT1002_01022	0.19	+1.7
1,133,041	+		MIT1002_01022	0.20	+0.6
1,133,068	+		MIT1002_01022	0.22	+1.1
1,133,115	-		MIT1002_01022	0.24	+1.2
1,133,147	+		MIT1002_01022	0.26	+0.0
1,133,170	-		MIT1002_01022	0.27	+0.3
1,133,177	+		MIT1002_01022	0.27	+1.0
1,133,185	-		MIT1002_01022	0.27	+0.4
1,133,195	+		MIT1002_01022	0.28	+0.5
1,133,195	+		MIT1002_01022	0.28	+0.5
1,133,203	-		MIT1002_01022	0.28	+0.7
1,133,203	-		MIT1002_01022	0.28	-0.6
1,133,203	-		MIT1002_01022	0.28	+0.5
1,133,243	-		MIT1002_01022	0.30	+2.9
1,133,243	-		MIT1002_01022	0.30	-0.1
1,133,250	+		MIT1002_01022	0.31	-0.3
1,133,284	-		MIT1002_01022	0.33	-0.6
1,133,298	+		MIT1002_01022	0.33	+3.0
1,133,324	+		MIT1002_01022	0.35	-0.4
1,133,393	-		MIT1002_01022	0.38	-1.3
1,133,428	-		MIT1002_01022	0.40	-0.2
1,133,481	+		MIT1002_01022	0.43	-0.2
1,133,496	-		MIT1002_01022	0.43	+0.8
1,133,505	+		MIT1002_01022	0.44	+0.5
1,133,505	-		MIT1002_01022	0.44	-1.5
1,133,513	-		MIT1002_01022	0.44	+1.5
1,133,626	+		MIT1002_01022	0.50	+1.9
1,133,627	+		MIT1002_01022	0.50	+1.2
1,133,634	-		MIT1002_01022	0.50	+0.5
1,133,698	+		MIT1002_01022	0.54	+0.7
1,133,730	+		MIT1002_01022	0.55	-2.2
1,133,730	+		MIT1002_01022	0.55	-2.9
1,133,730	+		MIT1002_01022	0.55	+0.8
1,133,744	+		MIT1002_01022	0.56	+0.4
1,133,748	-		MIT1002_01022	0.56	+0.8
1,133,752	-		MIT1002_01022	0.56	+0.4
1,133,752	-		MIT1002_01022	0.56	+0.3
1,133,754	-		MIT1002_01022	0.56	+0.8
1,133,846	+		MIT1002_01022	0.61	-0.1
1,133,954	+		MIT1002_01022	0.67	+1.7
1,133,961	+		MIT1002_01022	0.67	-2.2
1,133,971	+		MIT1002_01022	0.67	+0.2
1,133,996	-		MIT1002_01022	0.69	+1.1
1,134,095	+		MIT1002_01022	0.74	+0.8
1,134,133	+		MIT1002_01022	0.76	+0.5
1,134,135	+		MIT1002_01022	0.76	+0.4
1,134,143	-		MIT1002_01022	0.76	+0.9
1,134,171	+		MIT1002_01022	0.78	-0.7
1,134,179	-		MIT1002_01022	0.78	-0.2
1,134,179	-		MIT1002_01022	0.78	-0.8
1,134,256	-		MIT1002_01022	0.82	+1.5
1,134,313	+		MIT1002_01022	0.85	+0.0
1,134,336	-		MIT1002_01022	0.86	+1.6
1,134,351	+		MIT1002_01022	0.87	-0.4
1,134,386	+		MIT1002_01022	0.89	-0.7
1,134,404	+		MIT1002_01022	0.89	+0.2
1,134,535	+				+1.9
1,134,558	+				+0.7
1,134,616	+				+0.3
1,134,616	+				+2.2
1,134,618	+				+1.1
1,134,624	-				+0.3
1,134,626	-				-1.2
1,134,626	-				-1.0
1,134,684	+				-0.3
1,134,684	+				+0.2
1,134,687	-				-0.3
1,134,756	-		MIT1002_01023	0.29	+0.7
1,134,848	+		MIT1002_01023	0.69	+2.5
1,135,113	-				+1.3
1,135,290	+				-1.7