Experiment: monoculture; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00756 and MIT1002_00757 are separated by 176 nucleotides MIT1002_00757 and MIT1002_00758 are separated by 13 nucleotides
MIT1002_00756: MIT1002_00756 - TonB-dependent receptor, at 830,599 to 833,247
_00756
MIT1002_00757: MIT1002_00757 - hypothetical protein, at 833,424 to 834,182
_00757
MIT1002_00758: MIT1002_00758 - Biopolymer transport protein ExbB, at 834,196 to 835,560
_00758
Position (kb) 833
834
835 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 832.431 kb on + strand, within MIT1002_00756 at 832.461 kb on + strand, within MIT1002_00756 at 832.497 kb on - strand, within MIT1002_00756 at 832.560 kb on + strand, within MIT1002_00756 at 832.573 kb on - strand, within MIT1002_00756 at 832.573 kb on - strand, within MIT1002_00756 at 832.578 kb on - strand, within MIT1002_00756 at 832.578 kb on - strand, within MIT1002_00756 at 832.578 kb on - strand, within MIT1002_00756 at 832.630 kb on + strand, within MIT1002_00756 at 832.635 kb on - strand, within MIT1002_00756 at 832.663 kb on + strand, within MIT1002_00756 at 832.695 kb on - strand, within MIT1002_00756 at 832.699 kb on + strand, within MIT1002_00756 at 832.699 kb on + strand, within MIT1002_00756 at 832.699 kb on + strand, within MIT1002_00756 at 832.699 kb on + strand, within MIT1002_00756 at 832.700 kb on - strand, within MIT1002_00756 at 832.702 kb on - strand, within MIT1002_00756 at 832.707 kb on - strand, within MIT1002_00756 at 832.707 kb on - strand, within MIT1002_00756 at 832.749 kb on + strand, within MIT1002_00756 at 832.749 kb on + strand, within MIT1002_00756 at 832.749 kb on + strand, within MIT1002_00756 at 832.749 kb on + strand, within MIT1002_00756 at 832.749 kb on + strand, within MIT1002_00756 at 832.757 kb on - strand, within MIT1002_00756 at 832.757 kb on - strand, within MIT1002_00756 at 832.757 kb on - strand, within MIT1002_00756 at 832.757 kb on - strand, within MIT1002_00756 at 832.757 kb on - strand, within MIT1002_00756 at 832.757 kb on - strand, within MIT1002_00756 at 832.788 kb on - strand, within MIT1002_00756 at 832.804 kb on + strand, within MIT1002_00756 at 832.832 kb on + strand, within MIT1002_00756 at 832.925 kb on + strand, within MIT1002_00756 at 832.925 kb on + strand, within MIT1002_00756 at 832.942 kb on + strand, within MIT1002_00756 at 833.079 kb on + strand at 833.103 kb on - strand at 833.105 kb on - strand at 833.163 kb on - strand at 833.190 kb on + strand at 833.208 kb on + strand at 833.208 kb on + strand at 833.215 kb on + strand at 833.215 kb on - strand at 833.216 kb on + strand at 833.223 kb on - strand at 833.223 kb on - strand at 833.223 kb on - strand at 833.224 kb on - strand at 833.241 kb on + strand at 833.249 kb on + strand at 833.268 kb on + strand at 833.413 kb on + strand at 833.422 kb on + strand at 833.439 kb on + strand at 833.534 kb on + strand, within MIT1002_00757 at 833.561 kb on + strand, within MIT1002_00757 at 833.569 kb on + strand, within MIT1002_00757 at 833.601 kb on - strand, within MIT1002_00757 at 833.603 kb on - strand, within MIT1002_00757 at 833.611 kb on - strand, within MIT1002_00757 at 833.611 kb on - strand, within MIT1002_00757 at 833.632 kb on + strand, within MIT1002_00757 at 833.632 kb on + strand, within MIT1002_00757 at 833.632 kb on + strand, within MIT1002_00757 at 833.640 kb on - strand, within MIT1002_00757 at 833.640 kb on - strand, within MIT1002_00757 at 833.640 kb on - strand, within MIT1002_00757 at 833.647 kb on - strand, within MIT1002_00757 at 833.722 kb on + strand, within MIT1002_00757 at 833.727 kb on - strand, within MIT1002_00757 at 833.746 kb on + strand, within MIT1002_00757 at 833.756 kb on - strand, within MIT1002_00757 at 833.770 kb on + strand, within MIT1002_00757 at 833.770 kb on + strand, within MIT1002_00757 at 833.770 kb on + strand, within MIT1002_00757 at 833.778 kb on - strand, within MIT1002_00757 at 833.780 kb on - strand, within MIT1002_00757 at 833.783 kb on - strand, within MIT1002_00757 at 833.845 kb on + strand, within MIT1002_00757 at 833.847 kb on + strand, within MIT1002_00757 at 833.847 kb on + strand, within MIT1002_00757 at 833.847 kb on + strand, within MIT1002_00757 at 833.847 kb on + strand, within MIT1002_00757 at 833.847 kb on + strand, within MIT1002_00757 at 833.855 kb on - strand, within MIT1002_00757 at 833.857 kb on + strand, within MIT1002_00757 at 833.898 kb on - strand, within MIT1002_00757 at 833.934 kb on + strand, within MIT1002_00757 at 833.940 kb on - strand, within MIT1002_00757 at 833.942 kb on - strand, within MIT1002_00757 at 834.017 kb on - strand, within MIT1002_00757 at 834.038 kb on + strand, within MIT1002_00757 at 834.078 kb on + strand, within MIT1002_00757 at 834.177 kb on + strand at 834.206 kb on - strand at 834.226 kb on + strand at 834.283 kb on + strand at 834.374 kb on + strand, within MIT1002_00758 at 834.387 kb on - strand, within MIT1002_00758 at 834.444 kb on + strand, within MIT1002_00758 at 834.444 kb on + strand, within MIT1002_00758 at 834.444 kb on + strand, within MIT1002_00758 at 834.484 kb on + strand, within MIT1002_00758 at 834.486 kb on + strand, within MIT1002_00758 at 834.496 kb on + strand, within MIT1002_00758 at 834.508 kb on + strand, within MIT1002_00758 at 834.508 kb on + strand, within MIT1002_00758 at 834.528 kb on - strand, within MIT1002_00758 at 834.544 kb on - strand, within MIT1002_00758 at 834.582 kb on - strand, within MIT1002_00758 at 834.642 kb on - strand, within MIT1002_00758 at 834.648 kb on - strand, within MIT1002_00758 at 834.738 kb on + strand, within MIT1002_00758 at 834.746 kb on - strand, within MIT1002_00758 at 834.746 kb on - strand, within MIT1002_00758 at 834.785 kb on - strand, within MIT1002_00758 at 834.835 kb on + strand, within MIT1002_00758 at 834.835 kb on + strand, within MIT1002_00758 at 834.843 kb on - strand, within MIT1002_00758 at 834.869 kb on - strand, within MIT1002_00758 at 834.942 kb on + strand, within MIT1002_00758 at 834.950 kb on - strand, within MIT1002_00758 at 834.961 kb on - strand, within MIT1002_00758 at 834.977 kb on + strand, within MIT1002_00758 at 834.985 kb on - strand, within MIT1002_00758 at 834.998 kb on + strand, within MIT1002_00758 at 834.998 kb on + strand, within MIT1002_00758 at 835.000 kb on + strand, within MIT1002_00758 at 835.000 kb on + strand, within MIT1002_00758 at 835.000 kb on + strand, within MIT1002_00758 at 835.000 kb on + strand, within MIT1002_00758 at 835.010 kb on + strand, within MIT1002_00758 at 835.010 kb on + strand, within MIT1002_00758 at 835.010 kb on + strand, within MIT1002_00758 at 835.015 kb on + strand, within MIT1002_00758 at 835.015 kb on + strand, within MIT1002_00758 at 835.018 kb on - strand, within MIT1002_00758 at 835.018 kb on - strand, within MIT1002_00758 at 835.028 kb on - strand, within MIT1002_00758 at 835.076 kb on + strand, within MIT1002_00758 at 835.117 kb on - strand, within MIT1002_00758 at 835.134 kb on + strand, within MIT1002_00758
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4 remove 832,431 + MIT1002_00756 0.69 -4.6 832,461 + MIT1002_00756 0.70 -0.9 832,497 - MIT1002_00756 0.72 -3.4 832,560 + MIT1002_00756 0.74 -1.9 832,573 - MIT1002_00756 0.75 -4.2 832,573 - MIT1002_00756 0.75 -2.1 832,578 - MIT1002_00756 0.75 -2.0 832,578 - MIT1002_00756 0.75 -2.5 832,578 - MIT1002_00756 0.75 -0.6 832,630 + MIT1002_00756 0.77 -3.3 832,635 - MIT1002_00756 0.77 -3.5 832,663 + MIT1002_00756 0.78 -1.9 832,695 - MIT1002_00756 0.79 -2.8 832,699 + MIT1002_00756 0.79 -6.0 832,699 + MIT1002_00756 0.79 -4.8 832,699 + MIT1002_00756 0.79 -0.5 832,699 + MIT1002_00756 0.79 -4.4 832,700 - MIT1002_00756 0.79 -4.9 832,702 - MIT1002_00756 0.79 -1.4 832,707 - MIT1002_00756 0.80 -2.8 832,707 - MIT1002_00756 0.80 -4.3 832,749 + MIT1002_00756 0.81 -3.3 832,749 + MIT1002_00756 0.81 -3.6 832,749 + MIT1002_00756 0.81 -2.0 832,749 + MIT1002_00756 0.81 -5.8 832,749 + MIT1002_00756 0.81 -3.6 832,757 - MIT1002_00756 0.81 -1.0 832,757 - MIT1002_00756 0.81 -3.6 832,757 - MIT1002_00756 0.81 -0.1 832,757 - MIT1002_00756 0.81 -3.3 832,757 - MIT1002_00756 0.81 -1.9 832,757 - MIT1002_00756 0.81 -4.0 832,788 - MIT1002_00756 0.83 -2.7 832,804 + MIT1002_00756 0.83 -2.9 832,832 + MIT1002_00756 0.84 -3.0 832,925 + MIT1002_00756 0.88 -1.5 832,925 + MIT1002_00756 0.88 -1.8 832,942 + MIT1002_00756 0.88 -1.5 833,079 + -5.9 833,103 - -3.8 833,105 - -3.1 833,163 - -3.9 833,190 + -3.2 833,208 + -2.4 833,208 + -4.1 833,215 + -2.6 833,215 - -2.2 833,216 + -6.5 833,223 - -1.5 833,223 - -1.8 833,223 - -5.4 833,224 - -7.3 833,241 + +1.5 833,249 + +2.6 833,268 + +1.4 833,413 + -1.2 833,422 + -3.4 833,439 + -5.6 833,534 + MIT1002_00757 0.14 -6.9 833,561 + MIT1002_00757 0.18 -2.3 833,569 + MIT1002_00757 0.19 -1.8 833,601 - MIT1002_00757 0.23 -4.5 833,603 - MIT1002_00757 0.24 -1.8 833,611 - MIT1002_00757 0.25 -2.2 833,611 - MIT1002_00757 0.25 +0.2 833,632 + MIT1002_00757 0.27 -4.4 833,632 + MIT1002_00757 0.27 -1.5 833,632 + MIT1002_00757 0.27 -1.6 833,640 - MIT1002_00757 0.28 -2.4 833,640 - MIT1002_00757 0.28 -1.2 833,640 - MIT1002_00757 0.28 -2.3 833,647 - MIT1002_00757 0.29 -1.5 833,722 + MIT1002_00757 0.39 -1.3 833,727 - MIT1002_00757 0.40 -5.3 833,746 + MIT1002_00757 0.42 -3.7 833,756 - MIT1002_00757 0.44 -2.0 833,770 + MIT1002_00757 0.46 -4.6 833,770 + MIT1002_00757 0.46 -3.0 833,770 + MIT1002_00757 0.46 -3.2 833,778 - MIT1002_00757 0.47 -2.7 833,780 - MIT1002_00757 0.47 -3.1 833,783 - MIT1002_00757 0.47 -2.5 833,845 + MIT1002_00757 0.55 -0.8 833,847 + MIT1002_00757 0.56 -2.6 833,847 + MIT1002_00757 0.56 -4.4 833,847 + MIT1002_00757 0.56 -2.9 833,847 + MIT1002_00757 0.56 -0.8 833,847 + MIT1002_00757 0.56 -2.6 833,855 - MIT1002_00757 0.57 -2.6 833,857 + MIT1002_00757 0.57 -3.4 833,898 - MIT1002_00757 0.62 -1.8 833,934 + MIT1002_00757 0.67 -4.2 833,940 - MIT1002_00757 0.68 -3.8 833,942 - MIT1002_00757 0.68 -2.9 834,017 - MIT1002_00757 0.78 -1.3 834,038 + MIT1002_00757 0.81 -6.8 834,078 + MIT1002_00757 0.86 -2.2 834,177 + -1.2 834,206 - -1.5 834,226 + -3.1 834,283 + -1.9 834,374 + MIT1002_00758 0.13 -3.8 834,387 - MIT1002_00758 0.14 -2.3 834,444 + MIT1002_00758 0.18 -3.1 834,444 + MIT1002_00758 0.18 -4.0 834,444 + MIT1002_00758 0.18 -3.5 834,484 + MIT1002_00758 0.21 -4.9 834,486 + MIT1002_00758 0.21 -2.9 834,496 + MIT1002_00758 0.22 -2.5 834,508 + MIT1002_00758 0.23 -1.6 834,508 + MIT1002_00758 0.23 -3.1 834,528 - MIT1002_00758 0.24 -3.5 834,544 - MIT1002_00758 0.25 -2.9 834,582 - MIT1002_00758 0.28 -2.3 834,642 - MIT1002_00758 0.33 -3.0 834,648 - MIT1002_00758 0.33 -2.5 834,738 + MIT1002_00758 0.40 -2.9 834,746 - MIT1002_00758 0.40 -1.3 834,746 - MIT1002_00758 0.40 -3.3 834,785 - MIT1002_00758 0.43 -3.6 834,835 + MIT1002_00758 0.47 -2.2 834,835 + MIT1002_00758 0.47 -2.0 834,843 - MIT1002_00758 0.47 -2.3 834,869 - MIT1002_00758 0.49 -4.4 834,942 + MIT1002_00758 0.55 -1.3 834,950 - MIT1002_00758 0.55 -3.0 834,961 - MIT1002_00758 0.56 -2.4 834,977 + MIT1002_00758 0.57 -2.6 834,985 - MIT1002_00758 0.58 -2.8 834,998 + MIT1002_00758 0.59 +0.2 834,998 + MIT1002_00758 0.59 -1.8 835,000 + MIT1002_00758 0.59 -2.7 835,000 + MIT1002_00758 0.59 -0.9 835,000 + MIT1002_00758 0.59 -2.7 835,000 + MIT1002_00758 0.59 -5.6 835,010 + MIT1002_00758 0.60 -4.9 835,010 + MIT1002_00758 0.60 -1.5 835,010 + MIT1002_00758 0.60 -3.2 835,015 + MIT1002_00758 0.60 -3.2 835,015 + MIT1002_00758 0.60 -3.8 835,018 - MIT1002_00758 0.60 +0.5 835,018 - MIT1002_00758 0.60 -3.2 835,028 - MIT1002_00758 0.61 -1.9 835,076 + MIT1002_00758 0.64 -3.2 835,117 - MIT1002_00758 0.67 -4.1 835,134 + MIT1002_00758 0.69 -3.1
Or see this region's nucleotide sequence