Experiment: monoculture; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00644 and MIT1002_00645 are separated by 76 nucleotides MIT1002_00645 and MIT1002_00646 are separated by 31 nucleotides MIT1002_00646 and MIT1002_00647 are separated by 113 nucleotides
MIT1002_00644: MIT1002_00644 - hypothetical protein, at 698,717 to 700,222
_00644
MIT1002_00645: MIT1002_00645 - hypothetical protein, at 700,299 to 701,378
_00645
MIT1002_00646: MIT1002_00646 - Methyl-directed mismatch repair protein, at 701,410 to 702,087
_00646
MIT1002_00647: MIT1002_00647 - RNA pyrophosphohydrolase, at 702,201 to 702,743
_00647
Position (kb) 700
701
702 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 699.382 kb on - strand, within MIT1002_00644 at 699.409 kb on - strand, within MIT1002_00644 at 699.416 kb on + strand, within MIT1002_00644 at 699.433 kb on - strand, within MIT1002_00644 at 699.458 kb on - strand, within MIT1002_00644 at 699.495 kb on - strand, within MIT1002_00644 at 699.495 kb on - strand, within MIT1002_00644 at 699.525 kb on + strand, within MIT1002_00644 at 699.555 kb on + strand, within MIT1002_00644 at 699.555 kb on + strand, within MIT1002_00644 at 699.555 kb on + strand, within MIT1002_00644 at 699.555 kb on + strand, within MIT1002_00644 at 699.555 kb on + strand, within MIT1002_00644 at 699.563 kb on - strand, within MIT1002_00644 at 699.596 kb on + strand, within MIT1002_00644 at 699.620 kb on - strand, within MIT1002_00644 at 699.692 kb on + strand, within MIT1002_00644 at 699.720 kb on - strand, within MIT1002_00644 at 699.743 kb on - strand, within MIT1002_00644 at 699.778 kb on + strand, within MIT1002_00644 at 699.792 kb on + strand, within MIT1002_00644 at 699.792 kb on + strand, within MIT1002_00644 at 699.816 kb on - strand, within MIT1002_00644 at 699.906 kb on + strand, within MIT1002_00644 at 699.979 kb on - strand, within MIT1002_00644 at 700.038 kb on + strand, within MIT1002_00644 at 700.046 kb on - strand, within MIT1002_00644 at 700.083 kb on + strand at 700.154 kb on - strand at 700.188 kb on + strand at 700.196 kb on + strand at 700.261 kb on + strand at 700.268 kb on - strand at 700.285 kb on + strand at 700.400 kb on + strand at 700.414 kb on - strand, within MIT1002_00645 at 700.424 kb on + strand, within MIT1002_00645 at 700.424 kb on + strand, within MIT1002_00645 at 700.429 kb on + strand, within MIT1002_00645 at 700.443 kb on - strand, within MIT1002_00645 at 700.468 kb on + strand, within MIT1002_00645 at 700.479 kb on - strand, within MIT1002_00645 at 700.484 kb on - strand, within MIT1002_00645 at 700.484 kb on - strand, within MIT1002_00645 at 700.488 kb on + strand, within MIT1002_00645 at 700.551 kb on - strand, within MIT1002_00645 at 700.597 kb on - strand, within MIT1002_00645 at 700.688 kb on + strand, within MIT1002_00645 at 700.705 kb on - strand, within MIT1002_00645 at 700.705 kb on - strand, within MIT1002_00645 at 700.732 kb on + strand, within MIT1002_00645 at 700.745 kb on + strand, within MIT1002_00645 at 700.750 kb on + strand, within MIT1002_00645 at 700.753 kb on - strand, within MIT1002_00645 at 700.790 kb on + strand, within MIT1002_00645 at 700.798 kb on - strand, within MIT1002_00645 at 700.803 kb on - strand, within MIT1002_00645 at 700.854 kb on - strand, within MIT1002_00645 at 700.856 kb on - strand, within MIT1002_00645 at 700.880 kb on - strand, within MIT1002_00645 at 700.931 kb on - strand, within MIT1002_00645 at 700.993 kb on + strand, within MIT1002_00645 at 701.050 kb on + strand, within MIT1002_00645 at 701.050 kb on + strand, within MIT1002_00645 at 701.058 kb on - strand, within MIT1002_00645 at 701.094 kb on + strand, within MIT1002_00645 at 701.096 kb on + strand, within MIT1002_00645 at 701.139 kb on - strand, within MIT1002_00645 at 701.139 kb on - strand, within MIT1002_00645 at 701.139 kb on - strand, within MIT1002_00645 at 701.145 kb on - strand, within MIT1002_00645 at 701.260 kb on + strand, within MIT1002_00645 at 701.260 kb on + strand, within MIT1002_00645 at 701.260 kb on + strand, within MIT1002_00645 at 701.260 kb on + strand, within MIT1002_00645 at 701.354 kb on + strand at 701.392 kb on - strand at 701.397 kb on - strand at 701.487 kb on - strand, within MIT1002_00646 at 701.515 kb on + strand, within MIT1002_00646 at 701.515 kb on + strand, within MIT1002_00646 at 701.566 kb on - strand, within MIT1002_00646 at 701.590 kb on - strand, within MIT1002_00646 at 701.597 kb on + strand, within MIT1002_00646 at 701.621 kb on + strand, within MIT1002_00646 at 701.678 kb on + strand, within MIT1002_00646 at 701.697 kb on - strand, within MIT1002_00646 at 701.703 kb on + strand, within MIT1002_00646 at 701.716 kb on + strand, within MIT1002_00646 at 701.885 kb on - strand, within MIT1002_00646 at 701.887 kb on + strand, within MIT1002_00646 at 702.169 kb on + strand at 702.181 kb on - strand at 702.236 kb on - strand at 702.287 kb on - strand, within MIT1002_00647 at 702.305 kb on - strand, within MIT1002_00647
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4 remove 699,382 - MIT1002_00644 0.44 +0.4 699,409 - MIT1002_00644 0.46 +1.0 699,416 + MIT1002_00644 0.46 +0.2 699,433 - MIT1002_00644 0.48 -0.8 699,458 - MIT1002_00644 0.49 -0.5 699,495 - MIT1002_00644 0.52 -1.7 699,495 - MIT1002_00644 0.52 -0.0 699,525 + MIT1002_00644 0.54 -1.2 699,555 + MIT1002_00644 0.56 -0.0 699,555 + MIT1002_00644 0.56 -2.1 699,555 + MIT1002_00644 0.56 -1.6 699,555 + MIT1002_00644 0.56 -1.5 699,555 + MIT1002_00644 0.56 -3.4 699,563 - MIT1002_00644 0.56 -0.1 699,596 + MIT1002_00644 0.58 +0.3 699,620 - MIT1002_00644 0.60 +0.8 699,692 + MIT1002_00644 0.65 -0.3 699,720 - MIT1002_00644 0.67 -0.3 699,743 - MIT1002_00644 0.68 +0.5 699,778 + MIT1002_00644 0.70 +0.0 699,792 + MIT1002_00644 0.71 -1.2 699,792 + MIT1002_00644 0.71 -0.9 699,816 - MIT1002_00644 0.73 +0.2 699,906 + MIT1002_00644 0.79 -1.3 699,979 - MIT1002_00644 0.84 +0.4 700,038 + MIT1002_00644 0.88 +0.2 700,046 - MIT1002_00644 0.88 -0.5 700,083 + -0.0 700,154 - -1.5 700,188 + -1.9 700,196 + -0.6 700,261 + -2.1 700,268 - -0.3 700,285 + +0.2 700,400 + -0.5 700,414 - MIT1002_00645 0.11 -0.5 700,424 + MIT1002_00645 0.12 +0.4 700,424 + MIT1002_00645 0.12 +0.1 700,429 + MIT1002_00645 0.12 -0.9 700,443 - MIT1002_00645 0.13 -0.3 700,468 + MIT1002_00645 0.16 -0.8 700,479 - MIT1002_00645 0.17 -0.4 700,484 - MIT1002_00645 0.17 -0.4 700,484 - MIT1002_00645 0.17 +0.2 700,488 + MIT1002_00645 0.17 +1.4 700,551 - MIT1002_00645 0.23 -0.2 700,597 - MIT1002_00645 0.28 +0.8 700,688 + MIT1002_00645 0.36 +0.8 700,705 - MIT1002_00645 0.38 -0.2 700,705 - MIT1002_00645 0.38 -1.6 700,732 + MIT1002_00645 0.40 -1.1 700,745 + MIT1002_00645 0.41 +0.2 700,750 + MIT1002_00645 0.42 +1.0 700,753 - MIT1002_00645 0.42 -0.5 700,790 + MIT1002_00645 0.45 +0.7 700,798 - MIT1002_00645 0.46 +0.8 700,803 - MIT1002_00645 0.47 -0.9 700,854 - MIT1002_00645 0.51 -0.3 700,856 - MIT1002_00645 0.52 -0.4 700,880 - MIT1002_00645 0.54 -1.0 700,931 - MIT1002_00645 0.59 +1.6 700,993 + MIT1002_00645 0.64 +0.4 701,050 + MIT1002_00645 0.70 +0.5 701,050 + MIT1002_00645 0.70 +0.3 701,058 - MIT1002_00645 0.70 +0.2 701,094 + MIT1002_00645 0.74 -0.3 701,096 + MIT1002_00645 0.74 -0.7 701,139 - MIT1002_00645 0.78 -0.8 701,139 - MIT1002_00645 0.78 -0.3 701,139 - MIT1002_00645 0.78 -0.8 701,145 - MIT1002_00645 0.78 -0.8 701,260 + MIT1002_00645 0.89 -1.9 701,260 + MIT1002_00645 0.89 -0.5 701,260 + MIT1002_00645 0.89 -0.3 701,260 + MIT1002_00645 0.89 +0.1 701,354 + -1.0 701,392 - -1.1 701,397 - +1.7 701,487 - MIT1002_00646 0.11 +0.1 701,515 + MIT1002_00646 0.15 -0.1 701,515 + MIT1002_00646 0.15 +0.5 701,566 - MIT1002_00646 0.23 -0.6 701,590 - MIT1002_00646 0.27 +0.6 701,597 + MIT1002_00646 0.28 -0.2 701,621 + MIT1002_00646 0.31 -2.1 701,678 + MIT1002_00646 0.40 -1.2 701,697 - MIT1002_00646 0.42 +2.2 701,703 + MIT1002_00646 0.43 -0.0 701,716 + MIT1002_00646 0.45 -2.1 701,885 - MIT1002_00646 0.70 -0.7 701,887 + MIT1002_00646 0.70 -0.8 702,169 + +0.6 702,181 - -0.0 702,236 - -0.4 702,287 - MIT1002_00647 0.16 -1.1 702,305 - MIT1002_00647 0.19 +0.5
Or see this region's nucleotide sequence