Experiment: monoculture; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00539 and MIT1002_00540 are separated by 238 nucleotides MIT1002_00540 and MIT1002_00541 are separated by 106 nucleotides
MIT1002_00539: MIT1002_00539 - Malate-2H(+)/Na(+)-lactate antiporter, at 586,205 to 587,581
_00539
MIT1002_00540: MIT1002_00540 - Beta-hexosaminidase A precursor, at 587,820 to 589,751
_00540
MIT1002_00541: MIT1002_00541 - Mechanosensitive ion channel, at 589,858 to 590,928
_00541
Position (kb) 587
588
589
590 Strain fitness (log2 ratio) -2
-1
0
1
2 at 586.894 kb on + strand, within MIT1002_00539 at 586.898 kb on - strand, within MIT1002_00539 at 586.931 kb on + strand, within MIT1002_00539 at 586.931 kb on + strand, within MIT1002_00539 at 586.931 kb on + strand, within MIT1002_00539 at 586.956 kb on + strand, within MIT1002_00539 at 586.976 kb on + strand, within MIT1002_00539 at 586.976 kb on + strand, within MIT1002_00539 at 586.976 kb on + strand, within MIT1002_00539 at 586.976 kb on + strand, within MIT1002_00539 at 586.984 kb on - strand, within MIT1002_00539 at 586.984 kb on - strand, within MIT1002_00539 at 586.984 kb on - strand, within MIT1002_00539 at 586.984 kb on - strand, within MIT1002_00539 at 586.984 kb on - strand, within MIT1002_00539 at 587.065 kb on + strand, within MIT1002_00539 at 587.079 kb on - strand, within MIT1002_00539 at 587.082 kb on - strand, within MIT1002_00539 at 587.135 kb on + strand, within MIT1002_00539 at 587.135 kb on + strand, within MIT1002_00539 at 587.222 kb on + strand, within MIT1002_00539 at 587.270 kb on + strand, within MIT1002_00539 at 587.271 kb on - strand, within MIT1002_00539 at 587.275 kb on + strand, within MIT1002_00539 at 587.306 kb on - strand, within MIT1002_00539 at 587.340 kb on - strand, within MIT1002_00539 at 587.345 kb on - strand, within MIT1002_00539 at 587.354 kb on + strand, within MIT1002_00539 at 587.362 kb on - strand, within MIT1002_00539 at 587.362 kb on - strand, within MIT1002_00539 at 587.362 kb on - strand, within MIT1002_00539 at 587.362 kb on - strand, within MIT1002_00539 at 587.362 kb on - strand, within MIT1002_00539 at 587.364 kb on - strand, within MIT1002_00539 at 587.432 kb on - strand, within MIT1002_00539 at 587.437 kb on + strand, within MIT1002_00539 at 587.610 kb on + strand at 587.618 kb on - strand at 587.637 kb on - strand at 587.655 kb on - strand at 587.705 kb on - strand at 587.742 kb on + strand at 587.742 kb on + strand at 587.750 kb on - strand at 587.754 kb on + strand at 587.881 kb on - strand at 587.881 kb on - strand at 587.923 kb on + strand at 587.923 kb on + strand at 587.938 kb on - strand at 588.052 kb on + strand, within MIT1002_00540 at 588.155 kb on + strand, within MIT1002_00540 at 588.163 kb on - strand, within MIT1002_00540 at 588.163 kb on - strand, within MIT1002_00540 at 588.163 kb on - strand, within MIT1002_00540 at 588.163 kb on - strand, within MIT1002_00540 at 588.163 kb on - strand, within MIT1002_00540 at 588.163 kb on - strand, within MIT1002_00540 at 588.222 kb on + strand, within MIT1002_00540 at 588.235 kb on - strand, within MIT1002_00540 at 588.247 kb on + strand, within MIT1002_00540 at 588.247 kb on + strand, within MIT1002_00540 at 588.295 kb on + strand, within MIT1002_00540 at 588.382 kb on - strand, within MIT1002_00540 at 588.382 kb on - strand, within MIT1002_00540 at 588.507 kb on + strand, within MIT1002_00540 at 588.507 kb on + strand, within MIT1002_00540 at 588.507 kb on + strand, within MIT1002_00540 at 588.507 kb on + strand, within MIT1002_00540 at 588.507 kb on + strand, within MIT1002_00540 at 588.507 kb on + strand, within MIT1002_00540 at 588.508 kb on - strand, within MIT1002_00540 at 588.515 kb on - strand, within MIT1002_00540 at 588.515 kb on - strand, within MIT1002_00540 at 588.528 kb on - strand, within MIT1002_00540 at 588.558 kb on - strand, within MIT1002_00540 at 588.605 kb on - strand, within MIT1002_00540 at 588.646 kb on + strand, within MIT1002_00540 at 588.646 kb on + strand, within MIT1002_00540 at 588.665 kb on + strand, within MIT1002_00540 at 588.813 kb on - strand, within MIT1002_00540 at 588.813 kb on - strand, within MIT1002_00540 at 588.846 kb on - strand, within MIT1002_00540 at 588.872 kb on + strand, within MIT1002_00540 at 588.875 kb on - strand, within MIT1002_00540 at 588.875 kb on - strand, within MIT1002_00540 at 588.875 kb on - strand, within MIT1002_00540 at 588.889 kb on - strand, within MIT1002_00540 at 588.891 kb on + strand, within MIT1002_00540 at 589.067 kb on + strand, within MIT1002_00540 at 589.195 kb on - strand, within MIT1002_00540 at 589.295 kb on - strand, within MIT1002_00540 at 589.405 kb on + strand, within MIT1002_00540 at 589.442 kb on + strand, within MIT1002_00540 at 589.477 kb on + strand, within MIT1002_00540 at 589.537 kb on - strand, within MIT1002_00540 at 589.573 kb on - strand at 589.580 kb on - strand at 589.618 kb on + strand at 589.630 kb on + strand at 589.636 kb on - strand at 589.638 kb on - strand at 589.680 kb on - strand at 589.704 kb on - strand at 589.704 kb on - strand at 589.771 kb on + strand at 589.779 kb on - strand at 589.931 kb on - strand at 589.974 kb on + strand, within MIT1002_00541 at 589.976 kb on + strand, within MIT1002_00541 at 589.983 kb on + strand, within MIT1002_00541 at 589.988 kb on + strand, within MIT1002_00541 at 589.991 kb on - strand, within MIT1002_00541 at 589.991 kb on - strand, within MIT1002_00541 at 590.021 kb on - strand, within MIT1002_00541 at 590.023 kb on + strand, within MIT1002_00541 at 590.023 kb on + strand, within MIT1002_00541 at 590.052 kb on - strand, within MIT1002_00541 at 590.105 kb on - strand, within MIT1002_00541 at 590.107 kb on - strand, within MIT1002_00541 at 590.107 kb on - strand, within MIT1002_00541 at 590.107 kb on - strand, within MIT1002_00541 at 590.124 kb on + strand, within MIT1002_00541 at 590.212 kb on - strand, within MIT1002_00541 at 590.425 kb on + strand, within MIT1002_00541 at 590.443 kb on - strand, within MIT1002_00541 at 590.488 kb on - strand, within MIT1002_00541 at 590.553 kb on - strand, within MIT1002_00541 at 590.596 kb on + strand, within MIT1002_00541 at 590.661 kb on + strand, within MIT1002_00541 at 590.669 kb on - strand, within MIT1002_00541 at 590.675 kb on + strand, within MIT1002_00541
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4 remove 586,894 + MIT1002_00539 0.50 -1.9 586,898 - MIT1002_00539 0.50 +0.5 586,931 + MIT1002_00539 0.53 -1.0 586,931 + MIT1002_00539 0.53 +0.2 586,931 + MIT1002_00539 0.53 +0.5 586,956 + MIT1002_00539 0.55 +0.9 586,976 + MIT1002_00539 0.56 -0.4 586,976 + MIT1002_00539 0.56 +0.3 586,976 + MIT1002_00539 0.56 +1.1 586,976 + MIT1002_00539 0.56 +1.7 586,984 - MIT1002_00539 0.57 +2.2 586,984 - MIT1002_00539 0.57 -0.3 586,984 - MIT1002_00539 0.57 -0.8 586,984 - MIT1002_00539 0.57 -0.3 586,984 - MIT1002_00539 0.57 +1.0 587,065 + MIT1002_00539 0.62 -0.0 587,079 - MIT1002_00539 0.63 +0.9 587,082 - MIT1002_00539 0.64 +1.0 587,135 + MIT1002_00539 0.68 +0.9 587,135 + MIT1002_00539 0.68 -0.6 587,222 + MIT1002_00539 0.74 -0.8 587,270 + MIT1002_00539 0.77 +0.0 587,271 - MIT1002_00539 0.77 +1.2 587,275 + MIT1002_00539 0.78 -1.6 587,306 - MIT1002_00539 0.80 -0.5 587,340 - MIT1002_00539 0.82 +1.0 587,345 - MIT1002_00539 0.83 +1.3 587,354 + MIT1002_00539 0.83 -1.0 587,362 - MIT1002_00539 0.84 -0.0 587,362 - MIT1002_00539 0.84 +0.8 587,362 - MIT1002_00539 0.84 +0.3 587,362 - MIT1002_00539 0.84 -0.0 587,362 - MIT1002_00539 0.84 -0.6 587,364 - MIT1002_00539 0.84 +1.7 587,432 - MIT1002_00539 0.89 +1.0 587,437 + MIT1002_00539 0.89 +0.1 587,610 + +0.6 587,618 - +0.7 587,637 - -0.5 587,655 - +0.1 587,705 - +0.8 587,742 + +0.6 587,742 + -1.4 587,750 - +0.4 587,754 + -1.9 587,881 - +0.4 587,881 - +0.7 587,923 + -0.9 587,923 + -1.5 587,938 - +1.7 588,052 + MIT1002_00540 0.12 -0.8 588,155 + MIT1002_00540 0.17 -0.1 588,163 - MIT1002_00540 0.18 -1.7 588,163 - MIT1002_00540 0.18 -0.0 588,163 - MIT1002_00540 0.18 +0.1 588,163 - MIT1002_00540 0.18 +0.4 588,163 - MIT1002_00540 0.18 -1.0 588,163 - MIT1002_00540 0.18 -0.3 588,222 + MIT1002_00540 0.21 -0.4 588,235 - MIT1002_00540 0.21 +1.1 588,247 + MIT1002_00540 0.22 +0.9 588,247 + MIT1002_00540 0.22 +0.1 588,295 + MIT1002_00540 0.25 -0.1 588,382 - MIT1002_00540 0.29 +1.5 588,382 - MIT1002_00540 0.29 -0.1 588,507 + MIT1002_00540 0.36 +0.7 588,507 + MIT1002_00540 0.36 +1.1 588,507 + MIT1002_00540 0.36 +0.3 588,507 + MIT1002_00540 0.36 -2.7 588,507 + MIT1002_00540 0.36 +1.7 588,507 + MIT1002_00540 0.36 +1.9 588,508 - MIT1002_00540 0.36 +0.2 588,515 - MIT1002_00540 0.36 +0.8 588,515 - MIT1002_00540 0.36 +0.8 588,528 - MIT1002_00540 0.37 +1.3 588,558 - MIT1002_00540 0.38 -0.4 588,605 - MIT1002_00540 0.41 -1.0 588,646 + MIT1002_00540 0.43 -0.4 588,646 + MIT1002_00540 0.43 -0.5 588,665 + MIT1002_00540 0.44 +0.6 588,813 - MIT1002_00540 0.51 -0.7 588,813 - MIT1002_00540 0.51 -1.5 588,846 - MIT1002_00540 0.53 +1.1 588,872 + MIT1002_00540 0.54 +1.4 588,875 - MIT1002_00540 0.55 -2.5 588,875 - MIT1002_00540 0.55 +0.4 588,875 - MIT1002_00540 0.55 -0.4 588,889 - MIT1002_00540 0.55 -0.0 588,891 + MIT1002_00540 0.55 +0.9 589,067 + MIT1002_00540 0.65 +0.8 589,195 - MIT1002_00540 0.71 +0.7 589,295 - MIT1002_00540 0.76 -0.5 589,405 + MIT1002_00540 0.82 +0.4 589,442 + MIT1002_00540 0.84 +0.5 589,477 + MIT1002_00540 0.86 +0.2 589,537 - MIT1002_00540 0.89 +1.1 589,573 - +0.2 589,580 - +0.3 589,618 + +0.8 589,630 + -0.3 589,636 - -1.9 589,638 - +1.3 589,680 - +0.6 589,704 - -0.4 589,704 - -0.5 589,771 + -0.7 589,779 - -1.3 589,931 - -0.2 589,974 + MIT1002_00541 0.11 -0.5 589,976 + MIT1002_00541 0.11 -0.2 589,983 + MIT1002_00541 0.12 +0.0 589,988 + MIT1002_00541 0.12 +0.1 589,991 - MIT1002_00541 0.12 -0.7 589,991 - MIT1002_00541 0.12 -0.4 590,021 - MIT1002_00541 0.15 -0.5 590,023 + MIT1002_00541 0.15 -1.6 590,023 + MIT1002_00541 0.15 +0.3 590,052 - MIT1002_00541 0.18 -1.7 590,105 - MIT1002_00541 0.23 -0.5 590,107 - MIT1002_00541 0.23 +0.5 590,107 - MIT1002_00541 0.23 -1.0 590,107 - MIT1002_00541 0.23 +0.8 590,124 + MIT1002_00541 0.25 -0.0 590,212 - MIT1002_00541 0.33 -0.0 590,425 + MIT1002_00541 0.53 +0.0 590,443 - MIT1002_00541 0.55 +0.1 590,488 - MIT1002_00541 0.59 -0.2 590,553 - MIT1002_00541 0.65 +0.0 590,596 + MIT1002_00541 0.69 +0.0 590,661 + MIT1002_00541 0.75 -2.1 590,669 - MIT1002_00541 0.76 -0.1 590,675 + MIT1002_00541 0.76 -0.3
Or see this region's nucleotide sequence