Experiment: monoculture; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00485 and MIT1002_00486 are separated by 10 nucleotides MIT1002_00486 and MIT1002_00487 are separated by 62 nucleotides MIT1002_00487 and MIT1002_00488 are separated by 12 nucleotides MIT1002_00488 and MIT1002_00489 are separated by 253 nucleotides
MIT1002_00485: MIT1002_00485 - Glycerol-3-phosphate dehydrogenase [NAD(P)+], at 530,457 to 531,488
_00485
MIT1002_00486: MIT1002_00486 - Protein-export protein SecB, at 531,499 to 532,008
_00486
MIT1002_00487: MIT1002_00487 - Glutaredoxin-3, at 532,071 to 532,331
_00487
MIT1002_00488: MIT1002_00488 - Thiosulfate sulfurtransferase GlpE, at 532,344 to 532,769
_00488
MIT1002_00489: MIT1002_00489 - Septal ring factor, at 533,023 to 534,186
_00489
Position (kb) 532
533 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 531.097 kb on + strand, within MIT1002_00485 at 531.166 kb on + strand, within MIT1002_00485 at 531.179 kb on + strand, within MIT1002_00485 at 531.197 kb on - strand, within MIT1002_00485 at 531.219 kb on - strand, within MIT1002_00485 at 531.283 kb on - strand, within MIT1002_00485 at 531.336 kb on + strand, within MIT1002_00485 at 531.364 kb on + strand, within MIT1002_00485 at 531.374 kb on + strand, within MIT1002_00485 at 531.382 kb on - strand, within MIT1002_00485 at 531.387 kb on - strand at 531.419 kb on + strand at 531.481 kb on + strand at 531.489 kb on - strand at 531.518 kb on + strand at 531.598 kb on - strand, within MIT1002_00486 at 532.061 kb on - strand at 532.109 kb on - strand, within MIT1002_00487 at 532.222 kb on - strand, within MIT1002_00487 at 532.222 kb on - strand, within MIT1002_00487 at 532.222 kb on - strand, within MIT1002_00487 at 532.222 kb on - strand, within MIT1002_00487 at 532.324 kb on - strand at 532.369 kb on - strand at 532.369 kb on - strand at 532.461 kb on - strand, within MIT1002_00488 at 532.497 kb on + strand, within MIT1002_00488 at 532.537 kb on + strand, within MIT1002_00488 at 532.570 kb on + strand, within MIT1002_00488 at 532.570 kb on + strand, within MIT1002_00488 at 532.570 kb on + strand, within MIT1002_00488 at 532.570 kb on + strand, within MIT1002_00488 at 532.655 kb on - strand, within MIT1002_00488 at 532.772 kb on + strand at 532.772 kb on + strand at 532.773 kb on + strand at 532.773 kb on + strand at 532.773 kb on + strand at 532.773 kb on + strand at 532.773 kb on + strand at 532.780 kb on - strand at 532.781 kb on - strand at 532.781 kb on - strand at 532.781 kb on - strand at 532.781 kb on - strand at 532.801 kb on - strand at 532.803 kb on + strand at 532.850 kb on - strand at 532.922 kb on + strand at 532.922 kb on + strand at 532.922 kb on + strand at 532.922 kb on + strand at 532.922 kb on + strand at 532.930 kb on - strand at 532.944 kb on - strand at 532.981 kb on + strand at 533.063 kb on - strand at 533.063 kb on - strand at 533.104 kb on - strand at 533.112 kb on - strand at 533.162 kb on + strand, within MIT1002_00489 at 533.176 kb on + strand, within MIT1002_00489 at 533.177 kb on - strand, within MIT1002_00489 at 533.195 kb on - strand, within MIT1002_00489 at 533.198 kb on + strand, within MIT1002_00489 at 533.260 kb on + strand, within MIT1002_00489 at 533.265 kb on + strand, within MIT1002_00489 at 533.268 kb on - strand, within MIT1002_00489 at 533.307 kb on + strand, within MIT1002_00489
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4 remove 531,097 + MIT1002_00485 0.62 -1.4 531,166 + MIT1002_00485 0.69 +0.0 531,179 + MIT1002_00485 0.70 +0.8 531,197 - MIT1002_00485 0.72 -1.5 531,219 - MIT1002_00485 0.74 +0.1 531,283 - MIT1002_00485 0.80 +0.2 531,336 + MIT1002_00485 0.85 +0.9 531,364 + MIT1002_00485 0.88 +2.0 531,374 + MIT1002_00485 0.89 -1.0 531,382 - MIT1002_00485 0.90 -0.6 531,387 - -0.5 531,419 + -0.9 531,481 + +0.6 531,489 - +0.3 531,518 + -1.2 531,598 - MIT1002_00486 0.19 -0.6 532,061 - +0.7 532,109 - MIT1002_00487 0.15 -1.4 532,222 - MIT1002_00487 0.58 -1.6 532,222 - MIT1002_00487 0.58 -0.4 532,222 - MIT1002_00487 0.58 -0.3 532,222 - MIT1002_00487 0.58 -0.3 532,324 - -0.9 532,369 - +1.3 532,369 - -2.3 532,461 - MIT1002_00488 0.27 -0.4 532,497 + MIT1002_00488 0.36 +1.7 532,537 + MIT1002_00488 0.45 -1.1 532,570 + MIT1002_00488 0.53 -0.2 532,570 + MIT1002_00488 0.53 +1.0 532,570 + MIT1002_00488 0.53 -2.3 532,570 + MIT1002_00488 0.53 -0.9 532,655 - MIT1002_00488 0.73 +1.1 532,772 + -0.3 532,772 + -0.0 532,773 + +1.5 532,773 + -0.0 532,773 + -0.3 532,773 + +2.1 532,773 + -1.3 532,780 - -0.4 532,781 - +0.6 532,781 - -2.8 532,781 - -0.6 532,781 - +0.6 532,801 - -2.9 532,803 + -0.9 532,850 - +0.6 532,922 + -1.1 532,922 + +0.2 532,922 + +2.0 532,922 + -1.0 532,922 + -0.3 532,930 - -1.1 532,944 - +0.1 532,981 + +0.8 533,063 - -1.1 533,063 - +0.0 533,104 - -1.3 533,112 - -1.4 533,162 + MIT1002_00489 0.12 +0.4 533,176 + MIT1002_00489 0.13 -1.6 533,177 - MIT1002_00489 0.13 -0.5 533,195 - MIT1002_00489 0.15 -2.4 533,198 + MIT1002_00489 0.15 -1.1 533,260 + MIT1002_00489 0.20 -1.3 533,265 + MIT1002_00489 0.21 -0.9 533,268 - MIT1002_00489 0.21 -0.8 533,307 + MIT1002_00489 0.24 -2.1
Or see this region's nucleotide sequence