Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00459

Experiment: monoculture; Experiment C, time point 4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00458 and MIT1002_00459 are separated by 258 nucleotidesMIT1002_00459 and MIT1002_00460 are separated by 111 nucleotides MIT1002_00458: MIT1002_00458 - Transposase, at 501,958 to 503,154 _00458 MIT1002_00459: MIT1002_00459 - Transposase, at 503,413 to 504,609 _00459 MIT1002_00460: MIT1002_00460 - hypothetical protein, at 504,721 to 505,188 _00460 Position (kb) 503 504 505Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 503.175 kb on + strandat 503.180 kb on + strandat 504.662 kb on + strandat 504.662 kb on + strandat 504.667 kb on - strandat 504.670 kb on - strandat 504.670 kb on - strandat 504.670 kb on - strandat 504.821 kb on - strand, within MIT1002_00460at 504.887 kb on - strand, within MIT1002_00460at 504.955 kb on - strand, within MIT1002_00460at 504.995 kb on + strand, within MIT1002_00460at 505.157 kb on - strandat 505.197 kb on - strandat 505.198 kb on + strandat 505.307 kb on - strandat 505.307 kb on - strandat 505.317 kb on - strandat 505.343 kb on + strandat 505.351 kb on - strandat 505.351 kb on - strandat 505.431 kb on - strandat 505.431 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4
remove
503,175 + -0.5
503,180 + -0.5
504,662 + -0.4
504,662 + +0.5
504,667 - -3.8
504,670 - -0.0
504,670 - -0.3
504,670 - -0.6
504,821 - MIT1002_00460 0.21 +0.6
504,887 - MIT1002_00460 0.35 -0.5
504,955 - MIT1002_00460 0.50 -1.5
504,995 + MIT1002_00460 0.59 -0.0
505,157 - -1.4
505,197 - -0.9
505,198 + -0.3
505,307 - -0.2
505,307 - +0.9
505,317 - +0.6
505,343 + +1.2
505,351 - -0.1
505,351 - -0.9
505,431 - +1.2
505,431 - +1.2

Or see this region's nucleotide sequence