Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00425

Experiment: monoculture; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00423 and MIT1002_00424 are separated by 163 nucleotidesMIT1002_00424 and MIT1002_00425 are separated by 129 nucleotidesMIT1002_00425 and MIT1002_00426 overlap by 1 nucleotides MIT1002_00423: MIT1002_00423 - Aspartate carbamoyltransferase catalytic chain, at 457,721 to 458,734 _00423 MIT1002_00424: MIT1002_00424 - Solvent efflux pump srpABC operon corepressor, at 458,898 to 459,545 _00424 MIT1002_00425: MIT1002_00425 - Cation efflux system protein CzcB, at 459,675 to 460,814 _00425 MIT1002_00426: MIT1002_00426 - Cation efflux system protein CzcA, at 460,814 to 463,960 _00426 Position (kb) 459 460 461Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 458.774 kb on - strandat 458.784 kb on + strandat 458.810 kb on - strandat 458.810 kb on - strandat 458.875 kb on + strandat 458.936 kb on - strandat 458.940 kb on + strandat 458.998 kb on + strand, within MIT1002_00424at 459.008 kb on + strand, within MIT1002_00424at 459.016 kb on - strand, within MIT1002_00424at 459.018 kb on - strand, within MIT1002_00424at 459.028 kb on + strand, within MIT1002_00424at 459.028 kb on + strand, within MIT1002_00424at 459.028 kb on + strand, within MIT1002_00424at 459.028 kb on + strand, within MIT1002_00424at 459.060 kb on - strand, within MIT1002_00424at 459.082 kb on + strand, within MIT1002_00424at 459.086 kb on - strand, within MIT1002_00424at 459.122 kb on - strand, within MIT1002_00424at 459.272 kb on + strand, within MIT1002_00424at 459.290 kb on - strand, within MIT1002_00424at 459.316 kb on - strand, within MIT1002_00424at 459.326 kb on + strand, within MIT1002_00424at 459.412 kb on + strand, within MIT1002_00424at 459.412 kb on + strand, within MIT1002_00424at 459.418 kb on - strand, within MIT1002_00424at 459.418 kb on - strand, within MIT1002_00424at 459.418 kb on - strand, within MIT1002_00424at 459.440 kb on - strand, within MIT1002_00424at 459.600 kb on - strandat 459.619 kb on + strandat 459.638 kb on + strandat 459.646 kb on - strandat 459.649 kb on + strandat 459.659 kb on + strandat 459.667 kb on - strandat 459.671 kb on + strandat 459.680 kb on - strandat 459.827 kb on + strand, within MIT1002_00425at 459.981 kb on + strand, within MIT1002_00425at 459.981 kb on + strand, within MIT1002_00425at 459.989 kb on - strand, within MIT1002_00425at 459.989 kb on - strand, within MIT1002_00425at 459.989 kb on - strand, within MIT1002_00425at 460.115 kb on + strand, within MIT1002_00425at 460.153 kb on + strand, within MIT1002_00425at 460.161 kb on - strand, within MIT1002_00425at 460.442 kb on + strand, within MIT1002_00425at 460.442 kb on + strand, within MIT1002_00425at 460.442 kb on + strand, within MIT1002_00425at 460.442 kb on + strand, within MIT1002_00425at 460.442 kb on + strand, within MIT1002_00425at 460.442 kb on + strand, within MIT1002_00425at 460.450 kb on - strand, within MIT1002_00425at 460.510 kb on + strand, within MIT1002_00425at 460.556 kb on + strand, within MIT1002_00425at 460.600 kb on - strand, within MIT1002_00425at 460.661 kb on - strand, within MIT1002_00425at 460.661 kb on - strand, within MIT1002_00425at 460.751 kb on + strandat 460.754 kb on - strandat 460.775 kb on - strandat 460.786 kb on - strandat 460.793 kb on + strandat 460.808 kb on + strandat 460.852 kb on + strandat 461.137 kb on - strand, within MIT1002_00426at 461.147 kb on - strand, within MIT1002_00426at 461.170 kb on - strand, within MIT1002_00426at 461.198 kb on + strand, within MIT1002_00426at 461.318 kb on - strand, within MIT1002_00426at 461.375 kb on + strand, within MIT1002_00426at 461.438 kb on - strand, within MIT1002_00426at 461.438 kb on - strand, within MIT1002_00426at 461.458 kb on - strand, within MIT1002_00426at 461.492 kb on - strand, within MIT1002_00426at 461.515 kb on + strand, within MIT1002_00426at 461.515 kb on + strand, within MIT1002_00426at 461.523 kb on - strand, within MIT1002_00426at 461.523 kb on - strand, within MIT1002_00426at 461.583 kb on + strand, within MIT1002_00426at 461.609 kb on + strand, within MIT1002_00426at 461.631 kb on - strand, within MIT1002_00426at 461.671 kb on - strand, within MIT1002_00426at 461.736 kb on + strand, within MIT1002_00426at 461.744 kb on - strand, within MIT1002_00426at 461.782 kb on - strand, within MIT1002_00426

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4
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458,774 - -2.7
458,784 + -0.8
458,810 - -0.4
458,810 - +0.1
458,875 + -0.0
458,936 - +1.2
458,940 + +1.3
458,998 + MIT1002_00424 0.15 -0.3
459,008 + MIT1002_00424 0.17 +2.6
459,016 - MIT1002_00424 0.18 +0.2
459,018 - MIT1002_00424 0.19 +1.3
459,028 + MIT1002_00424 0.20 +1.6
459,028 + MIT1002_00424 0.20 +0.3
459,028 + MIT1002_00424 0.20 +0.5
459,028 + MIT1002_00424 0.20 +0.3
459,060 - MIT1002_00424 0.25 +2.3
459,082 + MIT1002_00424 0.28 +1.2
459,086 - MIT1002_00424 0.29 +1.7
459,122 - MIT1002_00424 0.35 +2.3
459,272 + MIT1002_00424 0.58 +1.7
459,290 - MIT1002_00424 0.60 +0.8
459,316 - MIT1002_00424 0.65 +0.8
459,326 + MIT1002_00424 0.66 -0.7
459,412 + MIT1002_00424 0.79 +0.7
459,412 + MIT1002_00424 0.79 +0.8
459,418 - MIT1002_00424 0.80 +1.5
459,418 - MIT1002_00424 0.80 +1.3
459,418 - MIT1002_00424 0.80 +3.3
459,440 - MIT1002_00424 0.84 -0.9
459,600 - +0.6
459,619 + +0.1
459,638 + +0.3
459,646 - -2.7
459,649 + +1.5
459,659 + +0.4
459,667 - -0.7
459,671 + -1.1
459,680 - +0.6
459,827 + MIT1002_00425 0.13 -1.4
459,981 + MIT1002_00425 0.27 -0.2
459,981 + MIT1002_00425 0.27 -2.0
459,989 - MIT1002_00425 0.28 -2.6
459,989 - MIT1002_00425 0.28 +0.1
459,989 - MIT1002_00425 0.28 -0.5
460,115 + MIT1002_00425 0.39 +0.2
460,153 + MIT1002_00425 0.42 +0.3
460,161 - MIT1002_00425 0.43 -2.3
460,442 + MIT1002_00425 0.67 +1.1
460,442 + MIT1002_00425 0.67 -0.1
460,442 + MIT1002_00425 0.67 -0.2
460,442 + MIT1002_00425 0.67 -0.5
460,442 + MIT1002_00425 0.67 +1.3
460,442 + MIT1002_00425 0.67 -1.4
460,450 - MIT1002_00425 0.68 -0.4
460,510 + MIT1002_00425 0.73 -0.2
460,556 + MIT1002_00425 0.77 +1.0
460,600 - MIT1002_00425 0.81 +1.2
460,661 - MIT1002_00425 0.86 -0.9
460,661 - MIT1002_00425 0.86 +0.4
460,751 + -0.3
460,754 - -3.1
460,775 - +0.7
460,786 - -1.1
460,793 + -0.5
460,808 + -0.7
460,852 + -0.7
461,137 - MIT1002_00426 0.10 -1.8
461,147 - MIT1002_00426 0.11 -1.1
461,170 - MIT1002_00426 0.11 +0.2
461,198 + MIT1002_00426 0.12 -0.2
461,318 - MIT1002_00426 0.16 -0.7
461,375 + MIT1002_00426 0.18 +0.5
461,438 - MIT1002_00426 0.20 +0.6
461,438 - MIT1002_00426 0.20 -0.5
461,458 - MIT1002_00426 0.20 -0.6
461,492 - MIT1002_00426 0.22 -0.6
461,515 + MIT1002_00426 0.22 -0.9
461,515 + MIT1002_00426 0.22 +0.5
461,523 - MIT1002_00426 0.23 -0.7
461,523 - MIT1002_00426 0.23 +0.8
461,583 + MIT1002_00426 0.24 -0.5
461,609 + MIT1002_00426 0.25 -0.2
461,631 - MIT1002_00426 0.26 +1.6
461,671 - MIT1002_00426 0.27 -1.0
461,736 + MIT1002_00426 0.29 -1.0
461,744 - MIT1002_00426 0.30 -1.2
461,782 - MIT1002_00426 0.31 -0.2

Or see this region's nucleotide sequence