Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00409

Experiment: monoculture; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00408 and MIT1002_00409 are separated by 267 nucleotidesMIT1002_00409 and MIT1002_00410 are separated by 145 nucleotidesMIT1002_00410 and MIT1002_00411 are separated by 11 nucleotidesMIT1002_00411 and MIT1002_00412 are separated by 372 nucleotides MIT1002_00408: MIT1002_00408 - Membrane-bound lytic murein transglycosylase B precursor, at 439,398 to 440,681 _00408 MIT1002_00409: MIT1002_00409 - Murein polymerase, at 440,949 to 443,300 _00409 MIT1002_00410: MIT1002_00410 - hypothetical protein, at 443,446 to 443,556 _00410 MIT1002_00411: MIT1002_00411 - hypothetical protein, at 443,568 to 443,852 _00411 MIT1002_00412: MIT1002_00412 - Inner membrane protein YedI, at 444,225 to 445,148 _00412 Position (kb) 440 441 442 443 444Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 440.021 kb on - strand, within MIT1002_00408at 440.031 kb on + strand, within MIT1002_00408at 440.035 kb on - strand, within MIT1002_00408at 440.061 kb on + strand, within MIT1002_00408at 440.069 kb on - strand, within MIT1002_00408at 440.113 kb on - strand, within MIT1002_00408at 440.125 kb on - strand, within MIT1002_00408at 440.180 kb on + strand, within MIT1002_00408at 440.328 kb on - strand, within MIT1002_00408at 440.334 kb on + strand, within MIT1002_00408at 440.412 kb on + strand, within MIT1002_00408at 440.420 kb on - strand, within MIT1002_00408at 440.424 kb on + strand, within MIT1002_00408at 440.430 kb on + strand, within MIT1002_00408at 440.430 kb on + strand, within MIT1002_00408at 440.482 kb on - strand, within MIT1002_00408at 440.482 kb on - strand, within MIT1002_00408at 440.510 kb on + strand, within MIT1002_00408at 440.551 kb on - strand, within MIT1002_00408at 440.614 kb on + strandat 440.620 kb on + strandat 440.649 kb on + strandat 440.722 kb on - strandat 440.781 kb on - strandat 440.783 kb on + strandat 440.791 kb on - strandat 440.798 kb on + strandat 440.828 kb on + strandat 440.828 kb on + strandat 440.833 kb on - strandat 441.084 kb on - strandat 441.155 kb on + strandat 441.186 kb on + strand, within MIT1002_00409at 441.300 kb on + strand, within MIT1002_00409at 441.308 kb on - strand, within MIT1002_00409at 441.331 kb on + strand, within MIT1002_00409at 441.331 kb on + strand, within MIT1002_00409at 441.339 kb on - strand, within MIT1002_00409at 441.339 kb on - strand, within MIT1002_00409at 441.347 kb on - strand, within MIT1002_00409at 441.347 kb on - strand, within MIT1002_00409at 441.439 kb on + strand, within MIT1002_00409at 441.523 kb on + strand, within MIT1002_00409at 441.582 kb on + strand, within MIT1002_00409at 441.583 kb on - strand, within MIT1002_00409at 441.632 kb on - strand, within MIT1002_00409at 441.817 kb on + strand, within MIT1002_00409at 441.825 kb on - strand, within MIT1002_00409at 441.825 kb on - strand, within MIT1002_00409at 441.825 kb on - strand, within MIT1002_00409at 441.943 kb on + strand, within MIT1002_00409at 441.951 kb on - strand, within MIT1002_00409at 442.067 kb on + strand, within MIT1002_00409at 442.074 kb on - strand, within MIT1002_00409at 442.097 kb on - strand, within MIT1002_00409at 442.135 kb on - strand, within MIT1002_00409at 442.165 kb on - strand, within MIT1002_00409at 442.187 kb on - strand, within MIT1002_00409at 442.221 kb on - strand, within MIT1002_00409at 442.329 kb on + strand, within MIT1002_00409at 442.329 kb on + strand, within MIT1002_00409at 442.373 kb on + strand, within MIT1002_00409at 442.399 kb on + strand, within MIT1002_00409at 442.407 kb on - strand, within MIT1002_00409at 442.416 kb on + strand, within MIT1002_00409at 442.450 kb on + strand, within MIT1002_00409at 442.506 kb on + strand, within MIT1002_00409at 442.516 kb on - strand, within MIT1002_00409at 442.591 kb on - strand, within MIT1002_00409at 442.601 kb on + strand, within MIT1002_00409at 442.653 kb on + strand, within MIT1002_00409at 442.655 kb on - strand, within MIT1002_00409at 442.661 kb on + strand, within MIT1002_00409at 442.683 kb on + strand, within MIT1002_00409at 442.685 kb on + strand, within MIT1002_00409at 442.712 kb on - strand, within MIT1002_00409at 442.712 kb on - strand, within MIT1002_00409at 442.761 kb on - strand, within MIT1002_00409at 442.811 kb on + strand, within MIT1002_00409at 442.819 kb on - strand, within MIT1002_00409at 442.853 kb on + strand, within MIT1002_00409at 442.941 kb on - strand, within MIT1002_00409at 443.040 kb on + strand, within MIT1002_00409at 443.040 kb on + strand, within MIT1002_00409at 443.040 kb on + strand, within MIT1002_00409at 443.093 kb on - strandat 443.115 kb on + strandat 443.115 kb on + strandat 443.115 kb on + strandat 443.123 kb on - strandat 443.123 kb on - strandat 443.123 kb on - strandat 443.123 kb on - strandat 443.123 kb on - strandat 443.123 kb on - strandat 443.162 kb on - strandat 443.241 kb on + strandat 443.350 kb on - strandat 443.356 kb on - strandat 443.472 kb on - strand, within MIT1002_00410at 443.506 kb on + strand, within MIT1002_00410at 443.541 kb on - strand, within MIT1002_00410at 443.582 kb on + strandat 443.590 kb on - strandat 443.614 kb on - strand, within MIT1002_00411at 443.707 kb on - strand, within MIT1002_00411at 443.719 kb on - strand, within MIT1002_00411at 443.794 kb on - strand, within MIT1002_00411at 443.799 kb on + strand, within MIT1002_00411at 443.810 kb on + strand, within MIT1002_00411at 443.825 kb on - strandat 443.877 kb on + strandat 443.883 kb on + strandat 443.905 kb on + strandat 443.965 kb on - strandat 444.145 kb on - strandat 444.186 kb on + strandat 444.205 kb on + strandat 444.207 kb on + strandat 444.213 kb on - strandat 444.230 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4
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440,021 - MIT1002_00408 0.49 +1.5
440,031 + MIT1002_00408 0.49 +0.8
440,035 - MIT1002_00408 0.50 +0.1
440,061 + MIT1002_00408 0.52 -0.3
440,069 - MIT1002_00408 0.52 -0.0
440,113 - MIT1002_00408 0.56 -0.4
440,125 - MIT1002_00408 0.57 -0.4
440,180 + MIT1002_00408 0.61 -0.2
440,328 - MIT1002_00408 0.72 -1.8
440,334 + MIT1002_00408 0.73 +1.3
440,412 + MIT1002_00408 0.79 +0.8
440,420 - MIT1002_00408 0.80 -0.5
440,424 + MIT1002_00408 0.80 +0.7
440,430 + MIT1002_00408 0.80 -0.7
440,430 + MIT1002_00408 0.80 +0.3
440,482 - MIT1002_00408 0.84 +2.5
440,482 - MIT1002_00408 0.84 -1.0
440,510 + MIT1002_00408 0.87 +0.1
440,551 - MIT1002_00408 0.90 +1.3
440,614 + +0.1
440,620 + -0.3
440,649 + +0.4
440,722 - -0.4
440,781 - +0.4
440,783 + +0.1
440,791 - -0.2
440,798 + -0.0
440,828 + +1.8
440,828 + -0.5
440,833 - -0.2
441,084 - +0.6
441,155 + -2.0
441,186 + MIT1002_00409 0.10 -0.7
441,300 + MIT1002_00409 0.15 +0.4
441,308 - MIT1002_00409 0.15 +0.4
441,331 + MIT1002_00409 0.16 -0.5
441,331 + MIT1002_00409 0.16 -0.0
441,339 - MIT1002_00409 0.17 -0.6
441,339 - MIT1002_00409 0.17 +0.1
441,347 - MIT1002_00409 0.17 +0.1
441,347 - MIT1002_00409 0.17 -0.2
441,439 + MIT1002_00409 0.21 -1.5
441,523 + MIT1002_00409 0.24 -1.1
441,582 + MIT1002_00409 0.27 +0.4
441,583 - MIT1002_00409 0.27 -1.0
441,632 - MIT1002_00409 0.29 +0.7
441,817 + MIT1002_00409 0.37 -1.8
441,825 - MIT1002_00409 0.37 +0.5
441,825 - MIT1002_00409 0.37 -2.7
441,825 - MIT1002_00409 0.37 -0.5
441,943 + MIT1002_00409 0.42 -0.9
441,951 - MIT1002_00409 0.43 -0.9
442,067 + MIT1002_00409 0.48 +1.1
442,074 - MIT1002_00409 0.48 -1.1
442,097 - MIT1002_00409 0.49 -1.6
442,135 - MIT1002_00409 0.50 +0.6
442,165 - MIT1002_00409 0.52 -0.4
442,187 - MIT1002_00409 0.53 -1.4
442,221 - MIT1002_00409 0.54 +0.4
442,329 + MIT1002_00409 0.59 -2.1
442,329 + MIT1002_00409 0.59 +0.2
442,373 + MIT1002_00409 0.61 -0.2
442,399 + MIT1002_00409 0.62 -0.8
442,407 - MIT1002_00409 0.62 -1.8
442,416 + MIT1002_00409 0.62 -1.6
442,450 + MIT1002_00409 0.64 -0.6
442,506 + MIT1002_00409 0.66 -0.3
442,516 - MIT1002_00409 0.67 -0.5
442,591 - MIT1002_00409 0.70 +0.6
442,601 + MIT1002_00409 0.70 -0.1
442,653 + MIT1002_00409 0.72 -0.3
442,655 - MIT1002_00409 0.73 +1.1
442,661 + MIT1002_00409 0.73 -0.1
442,683 + MIT1002_00409 0.74 -0.0
442,685 + MIT1002_00409 0.74 -0.7
442,712 - MIT1002_00409 0.75 +2.5
442,712 - MIT1002_00409 0.75 +0.8
442,761 - MIT1002_00409 0.77 -0.3
442,811 + MIT1002_00409 0.79 -0.4
442,819 - MIT1002_00409 0.80 -0.0
442,853 + MIT1002_00409 0.81 -0.5
442,941 - MIT1002_00409 0.85 -0.5
443,040 + MIT1002_00409 0.89 +0.1
443,040 + MIT1002_00409 0.89 -0.3
443,040 + MIT1002_00409 0.89 -0.7
443,093 - -2.3
443,115 + +1.5
443,115 + -0.2
443,115 + +0.7
443,123 - -1.9
443,123 - -2.0
443,123 - +1.0
443,123 - +0.6
443,123 - -0.1
443,123 - +0.7
443,162 - -0.6
443,241 + -0.2
443,350 - -0.5
443,356 - -1.6
443,472 - MIT1002_00410 0.23 +1.4
443,506 + MIT1002_00410 0.54 +0.1
443,541 - MIT1002_00410 0.86 -1.3
443,582 + +0.7
443,590 - -0.0
443,614 - MIT1002_00411 0.16 -0.1
443,707 - MIT1002_00411 0.49 -0.9
443,719 - MIT1002_00411 0.53 +0.8
443,794 - MIT1002_00411 0.79 -2.4
443,799 + MIT1002_00411 0.81 +1.2
443,810 + MIT1002_00411 0.85 +0.9
443,825 - -3.0
443,877 + +3.0
443,883 + +0.7
443,905 + -0.3
443,965 - -1.3
444,145 - +0.6
444,186 + +1.8
444,205 + -0.6
444,207 + +0.3
444,213 - +0.1
444,230 - -0.0

Or see this region's nucleotide sequence