Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00316

Experiment: monoculture; Experiment C, time point 4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00315 and MIT1002_00316 are separated by 9 nucleotidesMIT1002_00316 and MIT1002_00317 are separated by 144 nucleotides MIT1002_00315: MIT1002_00315 - heat shock protein HtpX, at 342,341 to 343,285 _00315 MIT1002_00316: MIT1002_00316 - Regulatory protein BlaI, at 343,295 to 343,681 _00316 MIT1002_00317: MIT1002_00317 - tyrosine recombinase XerC, at 343,826 to 345,115 _00317 Position (kb) 343 344Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 342.368 kb on + strandat 342.390 kb on + strandat 342.435 kb on + strandat 342.435 kb on + strandat 342.443 kb on - strand, within MIT1002_00315at 342.445 kb on - strand, within MIT1002_00315at 342.445 kb on - strand, within MIT1002_00315at 342.487 kb on + strand, within MIT1002_00315at 342.544 kb on + strand, within MIT1002_00315at 342.547 kb on - strand, within MIT1002_00315at 342.593 kb on - strand, within MIT1002_00315at 342.598 kb on - strand, within MIT1002_00315at 342.618 kb on + strand, within MIT1002_00315at 342.623 kb on + strand, within MIT1002_00315at 342.626 kb on - strand, within MIT1002_00315at 342.631 kb on - strand, within MIT1002_00315at 342.641 kb on + strand, within MIT1002_00315at 342.652 kb on + strand, within MIT1002_00315at 342.671 kb on + strand, within MIT1002_00315at 342.724 kb on + strand, within MIT1002_00315at 342.783 kb on + strand, within MIT1002_00315at 342.792 kb on - strand, within MIT1002_00315at 342.792 kb on - strand, within MIT1002_00315at 342.802 kb on + strand, within MIT1002_00315at 342.810 kb on - strand, within MIT1002_00315at 342.810 kb on - strand, within MIT1002_00315at 342.840 kb on + strand, within MIT1002_00315at 342.841 kb on + strand, within MIT1002_00315at 342.878 kb on - strand, within MIT1002_00315at 342.936 kb on + strand, within MIT1002_00315at 342.937 kb on + strand, within MIT1002_00315at 342.946 kb on - strand, within MIT1002_00315at 342.983 kb on - strand, within MIT1002_00315at 342.983 kb on - strand, within MIT1002_00315at 343.099 kb on + strand, within MIT1002_00315at 343.107 kb on - strand, within MIT1002_00315at 343.128 kb on - strand, within MIT1002_00315at 343.456 kb on + strand, within MIT1002_00316at 343.456 kb on + strand, within MIT1002_00316at 343.465 kb on + strand, within MIT1002_00316at 343.492 kb on + strand, within MIT1002_00316at 343.499 kb on + strand, within MIT1002_00316at 343.500 kb on - strand, within MIT1002_00316at 343.567 kb on - strand, within MIT1002_00316at 343.719 kb on + strandat 343.727 kb on - strandat 343.780 kb on + strandat 343.823 kb on + strandat 343.828 kb on + strandat 343.836 kb on - strandat 343.836 kb on - strandat 343.842 kb on + strandat 343.893 kb on + strandat 343.893 kb on + strandat 343.893 kb on + strandat 343.893 kb on + strandat 343.901 kb on - strandat 343.901 kb on - strandat 343.901 kb on - strandat 343.997 kb on + strand, within MIT1002_00317at 343.998 kb on + strand, within MIT1002_00317at 343.998 kb on + strand, within MIT1002_00317at 343.998 kb on + strand, within MIT1002_00317at 343.998 kb on + strand, within MIT1002_00317at 343.998 kb on + strand, within MIT1002_00317at 343.998 kb on + strand, within MIT1002_00317at 344.003 kb on + strand, within MIT1002_00317at 344.006 kb on - strand, within MIT1002_00317at 344.006 kb on - strand, within MIT1002_00317at 344.006 kb on - strand, within MIT1002_00317at 344.006 kb on - strand, within MIT1002_00317at 344.006 kb on - strand, within MIT1002_00317at 344.006 kb on - strand, within MIT1002_00317at 344.006 kb on - strand, within MIT1002_00317at 344.006 kb on - strand, within MIT1002_00317at 344.006 kb on - strand, within MIT1002_00317at 344.064 kb on - strand, within MIT1002_00317at 344.085 kb on + strand, within MIT1002_00317at 344.095 kb on + strand, within MIT1002_00317at 344.111 kb on - strand, within MIT1002_00317at 344.121 kb on + strand, within MIT1002_00317at 344.121 kb on + strand, within MIT1002_00317at 344.189 kb on + strand, within MIT1002_00317at 344.226 kb on + strand, within MIT1002_00317at 344.226 kb on + strand, within MIT1002_00317at 344.226 kb on + strand, within MIT1002_00317at 344.226 kb on + strand, within MIT1002_00317at 344.226 kb on + strand, within MIT1002_00317at 344.226 kb on + strand, within MIT1002_00317at 344.226 kb on + strand, within MIT1002_00317at 344.226 kb on + strand, within MIT1002_00317at 344.226 kb on + strand, within MIT1002_00317at 344.227 kb on + strand, within MIT1002_00317at 344.234 kb on - strand, within MIT1002_00317at 344.234 kb on - strand, within MIT1002_00317at 344.234 kb on - strand, within MIT1002_00317at 344.236 kb on + strand, within MIT1002_00317at 344.269 kb on + strand, within MIT1002_00317at 344.271 kb on - strand, within MIT1002_00317at 344.295 kb on - strand, within MIT1002_00317at 344.319 kb on + strand, within MIT1002_00317at 344.404 kb on + strand, within MIT1002_00317at 344.524 kb on + strand, within MIT1002_00317at 344.532 kb on + strand, within MIT1002_00317at 344.532 kb on - strand, within MIT1002_00317at 344.569 kb on - strand, within MIT1002_00317at 344.569 kb on - strand, within MIT1002_00317at 344.634 kb on - strand, within MIT1002_00317at 344.661 kb on - strand, within MIT1002_00317

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4
remove
342,368 + +0.1
342,390 + -1.0
342,435 + -0.3
342,435 + +0.2
342,443 - MIT1002_00315 0.11 +0.8
342,445 - MIT1002_00315 0.11 +0.2
342,445 - MIT1002_00315 0.11 -1.4
342,487 + MIT1002_00315 0.15 -1.7
342,544 + MIT1002_00315 0.21 -1.3
342,547 - MIT1002_00315 0.22 -0.3
342,593 - MIT1002_00315 0.27 -1.1
342,598 - MIT1002_00315 0.27 +0.5
342,618 + MIT1002_00315 0.29 +0.2
342,623 + MIT1002_00315 0.30 +1.4
342,626 - MIT1002_00315 0.30 -1.8
342,631 - MIT1002_00315 0.31 -0.6
342,641 + MIT1002_00315 0.32 -0.7
342,652 + MIT1002_00315 0.33 -1.5
342,671 + MIT1002_00315 0.35 -0.3
342,724 + MIT1002_00315 0.41 -0.8
342,783 + MIT1002_00315 0.47 +0.5
342,792 - MIT1002_00315 0.48 -2.7
342,792 - MIT1002_00315 0.48 -2.5
342,802 + MIT1002_00315 0.49 +0.0
342,810 - MIT1002_00315 0.50 +0.3
342,810 - MIT1002_00315 0.50 -1.9
342,840 + MIT1002_00315 0.53 -0.7
342,841 + MIT1002_00315 0.53 +0.8
342,878 - MIT1002_00315 0.57 -2.2
342,936 + MIT1002_00315 0.63 -1.2
342,937 + MIT1002_00315 0.63 +0.5
342,946 - MIT1002_00315 0.64 +0.1
342,983 - MIT1002_00315 0.68 -0.3
342,983 - MIT1002_00315 0.68 +0.1
343,099 + MIT1002_00315 0.80 +0.2
343,107 - MIT1002_00315 0.81 -0.1
343,128 - MIT1002_00315 0.83 +0.8
343,456 + MIT1002_00316 0.42 +7.2
343,456 + MIT1002_00316 0.42 -1.6
343,465 + MIT1002_00316 0.44 -2.6
343,492 + MIT1002_00316 0.51 -0.3
343,499 + MIT1002_00316 0.53 +1.3
343,500 - MIT1002_00316 0.53 +1.1
343,567 - MIT1002_00316 0.70 -1.6
343,719 + +0.7
343,727 - -0.3
343,780 + +0.3
343,823 + -0.1
343,828 + -0.2
343,836 - +0.9
343,836 - +0.1
343,842 + +0.5
343,893 + +0.0
343,893 + +1.1
343,893 + -1.9
343,893 + +0.8
343,901 - -0.4
343,901 - -0.8
343,901 - -0.2
343,997 + MIT1002_00317 0.13 +0.0
343,998 + MIT1002_00317 0.13 -0.3
343,998 + MIT1002_00317 0.13 +1.4
343,998 + MIT1002_00317 0.13 -0.4
343,998 + MIT1002_00317 0.13 +2.9
343,998 + MIT1002_00317 0.13 +0.8
343,998 + MIT1002_00317 0.13 -0.5
344,003 + MIT1002_00317 0.14 -0.7
344,006 - MIT1002_00317 0.14 +0.9
344,006 - MIT1002_00317 0.14 +1.3
344,006 - MIT1002_00317 0.14 -1.0
344,006 - MIT1002_00317 0.14 -0.1
344,006 - MIT1002_00317 0.14 -0.5
344,006 - MIT1002_00317 0.14 +0.3
344,006 - MIT1002_00317 0.14 -0.5
344,006 - MIT1002_00317 0.14 +0.1
344,006 - MIT1002_00317 0.14 -0.9
344,064 - MIT1002_00317 0.18 -0.3
344,085 + MIT1002_00317 0.20 +1.0
344,095 + MIT1002_00317 0.21 +0.9
344,111 - MIT1002_00317 0.22 -0.2
344,121 + MIT1002_00317 0.23 -1.0
344,121 + MIT1002_00317 0.23 +0.3
344,189 + MIT1002_00317 0.28 +0.4
344,226 + MIT1002_00317 0.31 -0.2
344,226 + MIT1002_00317 0.31 -0.7
344,226 + MIT1002_00317 0.31 +0.0
344,226 + MIT1002_00317 0.31 -0.4
344,226 + MIT1002_00317 0.31 -0.0
344,226 + MIT1002_00317 0.31 -0.4
344,226 + MIT1002_00317 0.31 -1.7
344,226 + MIT1002_00317 0.31 +0.3
344,226 + MIT1002_00317 0.31 +1.2
344,227 + MIT1002_00317 0.31 +1.2
344,234 - MIT1002_00317 0.32 +0.1
344,234 - MIT1002_00317 0.32 +0.2
344,234 - MIT1002_00317 0.32 +0.0
344,236 + MIT1002_00317 0.32 +0.3
344,269 + MIT1002_00317 0.34 +0.4
344,271 - MIT1002_00317 0.34 +1.3
344,295 - MIT1002_00317 0.36 -0.1
344,319 + MIT1002_00317 0.38 -0.7
344,404 + MIT1002_00317 0.45 -0.6
344,524 + MIT1002_00317 0.54 +0.2
344,532 + MIT1002_00317 0.55 -0.2
344,532 - MIT1002_00317 0.55 -0.6
344,569 - MIT1002_00317 0.58 +0.3
344,569 - MIT1002_00317 0.58 +1.3
344,634 - MIT1002_00317 0.63 +0.3
344,661 - MIT1002_00317 0.65 +1.8

Or see this region's nucleotide sequence