Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00313

Experiment: monoculture; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00312 and MIT1002_00313 are separated by 12 nucleotidesMIT1002_00313 and MIT1002_00314 overlap by 4 nucleotides MIT1002_00312: MIT1002_00312 - Cation efflux system protein CzcA, at 336,568 to 339,714 _00312 MIT1002_00313: MIT1002_00313 - Cation efflux system protein CzcB, at 339,727 to 340,965 _00313 MIT1002_00314: MIT1002_00314 - Cation efflux system protein CzcC, at 340,962 to 342,251 _00314 Position (kb) 339 340 341Strain fitness (log2 ratio) -2 -1 0 1 2 3at 338.730 kb on - strand, within MIT1002_00312at 338.730 kb on - strand, within MIT1002_00312at 338.732 kb on + strand, within MIT1002_00312at 338.827 kb on + strand, within MIT1002_00312at 338.833 kb on - strand, within MIT1002_00312at 338.839 kb on + strand, within MIT1002_00312at 338.873 kb on - strand, within MIT1002_00312at 338.897 kb on + strand, within MIT1002_00312at 338.987 kb on + strand, within MIT1002_00312at 339.081 kb on - strand, within MIT1002_00312at 339.087 kb on + strand, within MIT1002_00312at 339.095 kb on - strand, within MIT1002_00312at 339.118 kb on + strand, within MIT1002_00312at 339.126 kb on - strand, within MIT1002_00312at 339.221 kb on + strand, within MIT1002_00312at 339.221 kb on + strand, within MIT1002_00312at 339.221 kb on + strand, within MIT1002_00312at 339.229 kb on - strand, within MIT1002_00312at 339.229 kb on - strand, within MIT1002_00312at 339.229 kb on - strand, within MIT1002_00312at 339.229 kb on - strand, within MIT1002_00312at 339.266 kb on + strand, within MIT1002_00312at 339.337 kb on + strand, within MIT1002_00312at 339.345 kb on - strand, within MIT1002_00312at 339.345 kb on - strand, within MIT1002_00312at 339.435 kb on - strandat 339.470 kb on + strandat 339.481 kb on + strandat 339.528 kb on + strandat 339.536 kb on - strandat 339.536 kb on - strandat 339.536 kb on - strandat 339.545 kb on - strandat 339.552 kb on - strandat 339.592 kb on + strandat 339.600 kb on - strandat 339.677 kb on + strandat 339.798 kb on - strandat 339.833 kb on - strandat 339.855 kb on + strand, within MIT1002_00313at 339.983 kb on + strand, within MIT1002_00313at 339.983 kb on + strand, within MIT1002_00313at 339.983 kb on + strand, within MIT1002_00313at 339.983 kb on + strand, within MIT1002_00313at 339.983 kb on + strand, within MIT1002_00313at 339.983 kb on + strand, within MIT1002_00313at 339.991 kb on - strand, within MIT1002_00313at 339.991 kb on - strand, within MIT1002_00313at 339.991 kb on - strand, within MIT1002_00313at 339.991 kb on - strand, within MIT1002_00313at 339.991 kb on - strand, within MIT1002_00313at 339.991 kb on - strand, within MIT1002_00313at 339.991 kb on - strand, within MIT1002_00313at 339.993 kb on + strand, within MIT1002_00313at 339.993 kb on + strand, within MIT1002_00313at 340.011 kb on - strand, within MIT1002_00313at 340.064 kb on + strand, within MIT1002_00313at 340.064 kb on + strand, within MIT1002_00313at 340.110 kb on - strand, within MIT1002_00313at 340.303 kb on + strand, within MIT1002_00313at 340.303 kb on + strand, within MIT1002_00313at 340.415 kb on + strand, within MIT1002_00313at 340.423 kb on - strand, within MIT1002_00313at 340.423 kb on - strand, within MIT1002_00313at 340.423 kb on - strand, within MIT1002_00313at 340.495 kb on - strand, within MIT1002_00313at 340.557 kb on + strand, within MIT1002_00313at 340.565 kb on + strand, within MIT1002_00313at 340.596 kb on + strand, within MIT1002_00313at 340.606 kb on + strand, within MIT1002_00313at 340.695 kb on + strand, within MIT1002_00313at 340.705 kb on + strand, within MIT1002_00313at 340.729 kb on - strand, within MIT1002_00313at 340.734 kb on + strand, within MIT1002_00313at 340.742 kb on - strand, within MIT1002_00313at 340.746 kb on - strand, within MIT1002_00313at 340.805 kb on + strand, within MIT1002_00313at 340.813 kb on - strand, within MIT1002_00313at 340.912 kb on + strandat 340.967 kb on - strandat 341.035 kb on - strandat 341.058 kb on + strandat 341.058 kb on + strandat 341.096 kb on + strand, within MIT1002_00314at 341.102 kb on - strand, within MIT1002_00314at 341.165 kb on + strand, within MIT1002_00314at 341.168 kb on - strand, within MIT1002_00314at 341.173 kb on - strand, within MIT1002_00314at 341.173 kb on - strand, within MIT1002_00314at 341.195 kb on + strand, within MIT1002_00314at 341.195 kb on + strand, within MIT1002_00314at 341.215 kb on - strand, within MIT1002_00314at 341.226 kb on + strand, within MIT1002_00314at 341.286 kb on - strand, within MIT1002_00314at 341.291 kb on - strand, within MIT1002_00314at 341.327 kb on - strand, within MIT1002_00314at 341.335 kb on + strand, within MIT1002_00314at 341.398 kb on + strand, within MIT1002_00314at 341.398 kb on - strand, within MIT1002_00314at 341.424 kb on + strand, within MIT1002_00314at 341.424 kb on + strand, within MIT1002_00314at 341.584 kb on + strand, within MIT1002_00314at 341.584 kb on + strand, within MIT1002_00314at 341.589 kb on + strand, within MIT1002_00314at 341.653 kb on - strand, within MIT1002_00314at 341.695 kb on + strand, within MIT1002_00314at 341.721 kb on + strand, within MIT1002_00314at 341.721 kb on + strand, within MIT1002_00314at 341.723 kb on + strand, within MIT1002_00314at 341.729 kb on - strand, within MIT1002_00314at 341.729 kb on - strand, within MIT1002_00314at 341.733 kb on + strand, within MIT1002_00314at 341.733 kb on + strand, within MIT1002_00314at 341.803 kb on + strand, within MIT1002_00314at 341.826 kb on - strand, within MIT1002_00314at 341.842 kb on + strand, within MIT1002_00314at 341.842 kb on + strand, within MIT1002_00314at 341.842 kb on + strand, within MIT1002_00314at 341.850 kb on - strand, within MIT1002_00314at 341.944 kb on + strand, within MIT1002_00314at 341.945 kb on - strand, within MIT1002_00314at 341.963 kb on + strand, within MIT1002_00314at 341.963 kb on + strand, within MIT1002_00314at 341.963 kb on + strand, within MIT1002_00314at 341.963 kb on + strand, within MIT1002_00314at 341.963 kb on + strand, within MIT1002_00314

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4
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338,730 - MIT1002_00312 0.69 -1.4
338,730 - MIT1002_00312 0.69 +0.2
338,732 + MIT1002_00312 0.69 +0.5
338,827 + MIT1002_00312 0.72 +0.1
338,833 - MIT1002_00312 0.72 -1.0
338,839 + MIT1002_00312 0.72 +0.5
338,873 - MIT1002_00312 0.73 +0.9
338,897 + MIT1002_00312 0.74 +0.9
338,987 + MIT1002_00312 0.77 -0.5
339,081 - MIT1002_00312 0.80 -1.0
339,087 + MIT1002_00312 0.80 -1.5
339,095 - MIT1002_00312 0.80 -0.3
339,118 + MIT1002_00312 0.81 -1.0
339,126 - MIT1002_00312 0.81 +0.8
339,221 + MIT1002_00312 0.84 -0.8
339,221 + MIT1002_00312 0.84 +0.2
339,221 + MIT1002_00312 0.84 +0.1
339,229 - MIT1002_00312 0.85 -2.3
339,229 - MIT1002_00312 0.85 +0.4
339,229 - MIT1002_00312 0.85 +1.4
339,229 - MIT1002_00312 0.85 -0.5
339,266 + MIT1002_00312 0.86 +0.0
339,337 + MIT1002_00312 0.88 -0.6
339,345 - MIT1002_00312 0.88 +0.1
339,345 - MIT1002_00312 0.88 +0.6
339,435 - +0.5
339,470 + +1.6
339,481 + +0.1
339,528 + +0.0
339,536 - +0.4
339,536 - -1.8
339,536 - -0.2
339,545 - -0.4
339,552 - +0.7
339,592 + -0.9
339,600 - +1.5
339,677 + -1.7
339,798 - +3.3
339,833 - -0.9
339,855 + MIT1002_00313 0.10 -0.5
339,983 + MIT1002_00313 0.21 +0.6
339,983 + MIT1002_00313 0.21 -0.9
339,983 + MIT1002_00313 0.21 +2.3
339,983 + MIT1002_00313 0.21 -0.0
339,983 + MIT1002_00313 0.21 +1.2
339,983 + MIT1002_00313 0.21 +0.1
339,991 - MIT1002_00313 0.21 -2.6
339,991 - MIT1002_00313 0.21 -0.3
339,991 - MIT1002_00313 0.21 +0.3
339,991 - MIT1002_00313 0.21 +0.2
339,991 - MIT1002_00313 0.21 -0.2
339,991 - MIT1002_00313 0.21 +0.5
339,991 - MIT1002_00313 0.21 -0.1
339,993 + MIT1002_00313 0.21 +0.5
339,993 + MIT1002_00313 0.21 +0.0
340,011 - MIT1002_00313 0.23 -1.1
340,064 + MIT1002_00313 0.27 +0.4
340,064 + MIT1002_00313 0.27 +0.4
340,110 - MIT1002_00313 0.31 +0.9
340,303 + MIT1002_00313 0.46 -0.1
340,303 + MIT1002_00313 0.46 +0.6
340,415 + MIT1002_00313 0.56 -1.0
340,423 - MIT1002_00313 0.56 -0.5
340,423 - MIT1002_00313 0.56 +0.3
340,423 - MIT1002_00313 0.56 -0.8
340,495 - MIT1002_00313 0.62 -1.0
340,557 + MIT1002_00313 0.67 -1.2
340,565 + MIT1002_00313 0.68 +0.6
340,596 + MIT1002_00313 0.70 +0.7
340,606 + MIT1002_00313 0.71 -1.2
340,695 + MIT1002_00313 0.78 -0.3
340,705 + MIT1002_00313 0.79 +0.6
340,729 - MIT1002_00313 0.81 +0.3
340,734 + MIT1002_00313 0.81 +0.2
340,742 - MIT1002_00313 0.82 -1.2
340,746 - MIT1002_00313 0.82 +0.0
340,805 + MIT1002_00313 0.87 -0.2
340,813 - MIT1002_00313 0.88 +0.3
340,912 + +1.0
340,967 - -0.3
341,035 - -0.4
341,058 + -0.1
341,058 + -2.2
341,096 + MIT1002_00314 0.10 +0.6
341,102 - MIT1002_00314 0.11 -0.9
341,165 + MIT1002_00314 0.16 -0.2
341,168 - MIT1002_00314 0.16 +0.2
341,173 - MIT1002_00314 0.16 -0.2
341,173 - MIT1002_00314 0.16 -0.2
341,195 + MIT1002_00314 0.18 +0.1
341,195 + MIT1002_00314 0.18 +0.6
341,215 - MIT1002_00314 0.20 +0.8
341,226 + MIT1002_00314 0.20 +0.4
341,286 - MIT1002_00314 0.25 -0.8
341,291 - MIT1002_00314 0.26 -0.4
341,327 - MIT1002_00314 0.28 -1.2
341,335 + MIT1002_00314 0.29 -0.1
341,398 + MIT1002_00314 0.34 -0.5
341,398 - MIT1002_00314 0.34 +0.2
341,424 + MIT1002_00314 0.36 -0.1
341,424 + MIT1002_00314 0.36 -0.2
341,584 + MIT1002_00314 0.48 +0.3
341,584 + MIT1002_00314 0.48 +0.9
341,589 + MIT1002_00314 0.49 +0.5
341,653 - MIT1002_00314 0.54 +0.1
341,695 + MIT1002_00314 0.57 -1.1
341,721 + MIT1002_00314 0.59 -2.2
341,721 + MIT1002_00314 0.59 -0.3
341,723 + MIT1002_00314 0.59 +0.0
341,729 - MIT1002_00314 0.59 -1.2
341,729 - MIT1002_00314 0.59 -0.3
341,733 + MIT1002_00314 0.60 -0.1
341,733 + MIT1002_00314 0.60 +1.3
341,803 + MIT1002_00314 0.65 +0.5
341,826 - MIT1002_00314 0.67 +0.3
341,842 + MIT1002_00314 0.68 +0.1
341,842 + MIT1002_00314 0.68 -0.6
341,842 + MIT1002_00314 0.68 +0.5
341,850 - MIT1002_00314 0.69 +0.4
341,944 + MIT1002_00314 0.76 +0.0
341,945 - MIT1002_00314 0.76 -0.2
341,963 + MIT1002_00314 0.78 -0.6
341,963 + MIT1002_00314 0.78 -1.3
341,963 + MIT1002_00314 0.78 +0.1
341,963 + MIT1002_00314 0.78 -1.5
341,963 + MIT1002_00314 0.78 +0.3

Or see this region's nucleotide sequence