Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00263

Experiment: monoculture; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00261 and MIT1002_00262 are separated by 484 nucleotidesMIT1002_00262 and MIT1002_00263 are separated by 8 nucleotidesMIT1002_00263 and MIT1002_00264 are separated by 15 nucleotidesMIT1002_00264 and MIT1002_00265 are separated by 96 nucleotidesMIT1002_00265 and MIT1002_00266 are separated by 72 nucleotides MIT1002_00261: MIT1002_00261 - putative FAD-linked oxidoreductase YvdP, at 288,542 to 290,656 _00261 MIT1002_00262: MIT1002_00262 - hypothetical protein, at 291,141 to 291,263 _00262 MIT1002_00263: MIT1002_00263 - hypothetical protein, at 291,272 to 291,487 _00263 MIT1002_00264: MIT1002_00264 - putative heme-binding domain protein, at 291,503 to 291,796 _00264 MIT1002_00265: MIT1002_00265 - hypothetical protein, at 291,893 to 292,324 _00265 MIT1002_00266: MIT1002_00266 - hypothetical protein, at 292,397 to 292,753 _00266 Position (kb) 291 292Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 290.345 kb on - strand, within MIT1002_00261at 290.348 kb on - strand, within MIT1002_00261at 290.350 kb on + strand, within MIT1002_00261at 290.395 kb on - strand, within MIT1002_00261at 290.404 kb on + strand, within MIT1002_00261at 290.412 kb on - strand, within MIT1002_00261at 290.498 kb on - strandat 290.506 kb on + strandat 290.524 kb on + strandat 290.532 kb on - strandat 290.549 kb on - strandat 290.559 kb on - strandat 290.559 kb on - strandat 290.571 kb on + strandat 290.571 kb on + strandat 290.579 kb on - strandat 290.579 kb on - strandat 290.579 kb on - strandat 290.579 kb on - strandat 290.605 kb on + strandat 290.605 kb on + strandat 290.606 kb on + strandat 290.613 kb on - strandat 290.613 kb on - strandat 290.613 kb on - strandat 290.680 kb on + strandat 290.798 kb on - strandat 290.942 kb on + strandat 290.942 kb on + strandat 290.950 kb on - strandat 290.950 kb on - strandat 290.983 kb on - strandat 290.985 kb on - strandat 291.090 kb on - strandat 291.137 kb on - strandat 291.147 kb on - strandat 291.162 kb on - strand, within MIT1002_00262at 291.169 kb on + strand, within MIT1002_00262at 291.196 kb on - strand, within MIT1002_00262at 291.234 kb on - strand, within MIT1002_00262at 291.240 kb on + strand, within MIT1002_00262at 291.248 kb on - strand, within MIT1002_00262at 291.367 kb on - strand, within MIT1002_00263at 291.394 kb on + strand, within MIT1002_00263at 291.394 kb on + strand, within MIT1002_00263at 291.394 kb on + strand, within MIT1002_00263at 291.394 kb on + strand, within MIT1002_00263at 291.402 kb on - strand, within MIT1002_00263at 291.402 kb on - strand, within MIT1002_00263at 291.402 kb on - strand, within MIT1002_00263at 291.402 kb on - strand, within MIT1002_00263at 291.402 kb on - strand, within MIT1002_00263at 291.412 kb on - strand, within MIT1002_00263at 291.440 kb on - strand, within MIT1002_00263at 291.482 kb on + strandat 291.482 kb on + strandat 291.490 kb on - strandat 291.490 kb on - strandat 291.561 kb on + strand, within MIT1002_00264at 291.594 kb on + strand, within MIT1002_00264at 291.595 kb on - strand, within MIT1002_00264at 291.606 kb on + strand, within MIT1002_00264at 291.622 kb on - strand, within MIT1002_00264at 291.649 kb on + strand, within MIT1002_00264at 291.701 kb on - strand, within MIT1002_00264at 291.758 kb on - strand, within MIT1002_00264at 291.806 kb on - strandat 291.806 kb on - strandat 291.808 kb on - strandat 291.823 kb on + strandat 291.919 kb on + strandat 291.926 kb on + strandat 292.049 kb on + strand, within MIT1002_00265at 292.049 kb on + strand, within MIT1002_00265at 292.049 kb on + strand, within MIT1002_00265at 292.049 kb on + strand, within MIT1002_00265at 292.057 kb on - strand, within MIT1002_00265at 292.057 kb on - strand, within MIT1002_00265at 292.057 kb on - strand, within MIT1002_00265at 292.068 kb on - strand, within MIT1002_00265at 292.230 kb on + strand, within MIT1002_00265at 292.269 kb on + strand, within MIT1002_00265at 292.297 kb on + strandat 292.297 kb on + strandat 292.337 kb on + strandat 292.344 kb on + strandat 292.358 kb on - strandat 292.363 kb on + strandat 292.424 kb on + strandat 292.447 kb on + strand, within MIT1002_00266at 292.455 kb on - strand, within MIT1002_00266at 292.455 kb on - strand, within MIT1002_00266at 292.476 kb on - strand, within MIT1002_00266

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4
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290,345 - MIT1002_00261 0.85 -1.4
290,348 - MIT1002_00261 0.85 +1.9
290,350 + MIT1002_00261 0.85 -2.2
290,395 - MIT1002_00261 0.88 +0.3
290,404 + MIT1002_00261 0.88 -0.3
290,412 - MIT1002_00261 0.88 +0.2
290,498 - -2.1
290,506 + +3.4
290,524 + +0.3
290,532 - +0.9
290,549 - +0.7
290,559 - -2.0
290,559 - -0.2
290,571 + +0.4
290,571 + -0.2
290,579 - -0.9
290,579 - +0.1
290,579 - -0.6
290,579 - -1.8
290,605 + +0.2
290,605 + +0.3
290,606 + -2.4
290,613 - +0.7
290,613 - +0.6
290,613 - -0.3
290,680 + -0.2
290,798 - +1.2
290,942 + -0.2
290,942 + -0.8
290,950 - +0.9
290,950 - +2.6
290,983 - +0.2
290,985 - +1.8
291,090 - +0.4
291,137 - -0.8
291,147 - -1.6
291,162 - MIT1002_00262 0.17 -0.1
291,169 + MIT1002_00262 0.23 -0.4
291,196 - MIT1002_00262 0.45 -1.1
291,234 - MIT1002_00262 0.76 +1.1
291,240 + MIT1002_00262 0.80 -0.4
291,248 - MIT1002_00262 0.87 +0.1
291,367 - MIT1002_00263 0.44 -0.1
291,394 + MIT1002_00263 0.56 -0.6
291,394 + MIT1002_00263 0.56 +0.4
291,394 + MIT1002_00263 0.56 +0.1
291,394 + MIT1002_00263 0.56 -0.2
291,402 - MIT1002_00263 0.60 -0.0
291,402 - MIT1002_00263 0.60 -0.3
291,402 - MIT1002_00263 0.60 -0.0
291,402 - MIT1002_00263 0.60 -0.5
291,402 - MIT1002_00263 0.60 -1.2
291,412 - MIT1002_00263 0.65 -0.6
291,440 - MIT1002_00263 0.78 -0.1
291,482 + -0.1
291,482 + +1.2
291,490 - +0.9
291,490 - +0.3
291,561 + MIT1002_00264 0.20 -0.6
291,594 + MIT1002_00264 0.31 +0.6
291,595 - MIT1002_00264 0.31 +0.8
291,606 + MIT1002_00264 0.35 +0.9
291,622 - MIT1002_00264 0.40 -0.1
291,649 + MIT1002_00264 0.50 -0.9
291,701 - MIT1002_00264 0.67 -0.6
291,758 - MIT1002_00264 0.87 +0.4
291,806 - -1.6
291,806 - +0.4
291,808 - +0.1
291,823 + +1.0
291,919 + -2.0
291,926 + +1.1
292,049 + MIT1002_00265 0.36 +0.0
292,049 + MIT1002_00265 0.36 -0.4
292,049 + MIT1002_00265 0.36 +1.6
292,049 + MIT1002_00265 0.36 -0.5
292,057 - MIT1002_00265 0.38 -0.3
292,057 - MIT1002_00265 0.38 -1.3
292,057 - MIT1002_00265 0.38 -0.9
292,068 - MIT1002_00265 0.41 +0.4
292,230 + MIT1002_00265 0.78 +1.3
292,269 + MIT1002_00265 0.87 +1.4
292,297 + -0.3
292,297 + -1.8
292,337 + +1.3
292,344 + -0.2
292,358 - +1.6
292,363 + +0.4
292,424 + -1.1
292,447 + MIT1002_00266 0.14 -2.8
292,455 - MIT1002_00266 0.16 +0.2
292,455 - MIT1002_00266 0.16 +1.4
292,476 - MIT1002_00266 0.22 +0.3

Or see this region's nucleotide sequence