Experiment: monoculture; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00160 and MIT1002_00161 overlap by 1 nucleotides MIT1002_00161 and MIT1002_00162 are separated by 12 nucleotides MIT1002_00162 and MIT1002_00163 are separated by 1 nucleotides MIT1002_00163 and MIT1002_00164 are separated by 352 nucleotides
MIT1002_00160: MIT1002_00160 - Diaminopimelate decarboxylase, at 176,524 to 177,774
_00160
MIT1002_00161: MIT1002_00161 - putative small periplasmic lipoprotein, at 177,774 to 178,010
_00161
MIT1002_00162: MIT1002_00162 - putative glycosyl transferase, at 178,023 to 179,090
_00162
MIT1002_00163: MIT1002_00163 - phosphatidylglycerophosphatase B, at 179,092 to 179,610
_00163
MIT1002_00164: MIT1002_00164 - Regulator of ribonuclease activity A, at 179,963 to 180,448
_00164
Position (kb) 178
179
180 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 177.048 kb on - strand, within MIT1002_00160 at 177.053 kb on - strand, within MIT1002_00160 at 177.069 kb on + strand, within MIT1002_00160 at 177.174 kb on + strand, within MIT1002_00160 at 177.192 kb on - strand, within MIT1002_00160 at 177.199 kb on + strand, within MIT1002_00160 at 177.487 kb on - strand, within MIT1002_00160 at 177.800 kb on - strand, within MIT1002_00161 at 177.803 kb on - strand, within MIT1002_00161 at 177.808 kb on + strand, within MIT1002_00161 at 177.816 kb on - strand, within MIT1002_00161 at 177.829 kb on + strand, within MIT1002_00161 at 177.876 kb on - strand, within MIT1002_00161 at 178.097 kb on + strand at 178.105 kb on - strand at 178.105 kb on - strand at 178.197 kb on + strand, within MIT1002_00162 at 178.197 kb on + strand, within MIT1002_00162 at 178.205 kb on - strand, within MIT1002_00162 at 178.205 kb on - strand, within MIT1002_00162 at 178.298 kb on - strand, within MIT1002_00162 at 178.320 kb on - strand, within MIT1002_00162 at 178.351 kb on - strand, within MIT1002_00162 at 178.380 kb on + strand, within MIT1002_00162 at 178.380 kb on + strand, within MIT1002_00162 at 178.380 kb on + strand, within MIT1002_00162 at 178.380 kb on + strand, within MIT1002_00162 at 178.460 kb on + strand, within MIT1002_00162 at 178.521 kb on - strand, within MIT1002_00162 at 178.607 kb on + strand, within MIT1002_00162 at 178.623 kb on + strand, within MIT1002_00162 at 178.648 kb on + strand, within MIT1002_00162 at 178.701 kb on - strand, within MIT1002_00162 at 178.763 kb on - strand, within MIT1002_00162 at 178.847 kb on + strand, within MIT1002_00162 at 178.993 kb on + strand at 179.012 kb on + strand at 179.012 kb on + strand at 179.020 kb on - strand at 179.051 kb on - strand at 179.064 kb on + strand at 179.064 kb on + strand at 179.072 kb on - strand at 179.072 kb on - strand at 179.072 kb on - strand at 179.072 kb on - strand at 179.074 kb on + strand at 179.082 kb on - strand at 179.083 kb on + strand at 179.139 kb on - strand at 179.162 kb on - strand, within MIT1002_00163 at 179.170 kb on - strand, within MIT1002_00163 at 179.212 kb on + strand, within MIT1002_00163 at 179.212 kb on + strand, within MIT1002_00163 at 179.226 kb on - strand, within MIT1002_00163 at 179.252 kb on + strand, within MIT1002_00163 at 179.280 kb on - strand, within MIT1002_00163 at 179.362 kb on - strand, within MIT1002_00163 at 179.398 kb on - strand, within MIT1002_00163 at 179.426 kb on + strand, within MIT1002_00163 at 179.426 kb on + strand, within MIT1002_00163 at 179.429 kb on - strand, within MIT1002_00163 at 179.462 kb on + strand, within MIT1002_00163 at 179.462 kb on + strand, within MIT1002_00163 at 179.470 kb on - strand, within MIT1002_00163 at 179.633 kb on + strand at 179.643 kb on + strand at 179.651 kb on - strand at 179.885 kb on - strand at 179.895 kb on - strand at 179.909 kb on - strand at 179.961 kb on - strand at 179.966 kb on + strand at 179.966 kb on + strand at 179.976 kb on + strand at 179.976 kb on + strand at 179.976 kb on + strand at 179.976 kb on + strand at 179.984 kb on - strand at 179.984 kb on - strand at 180.006 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4 remove 177,048 - MIT1002_00160 0.42 -1.9 177,053 - MIT1002_00160 0.42 -2.7 177,069 + MIT1002_00160 0.44 -4.8 177,174 + MIT1002_00160 0.52 -3.2 177,192 - MIT1002_00160 0.53 -2.0 177,199 + MIT1002_00160 0.54 -3.1 177,487 - MIT1002_00160 0.77 -2.8 177,800 - MIT1002_00161 0.11 -3.1 177,803 - MIT1002_00161 0.12 -1.1 177,808 + MIT1002_00161 0.14 -3.5 177,816 - MIT1002_00161 0.18 -2.5 177,829 + MIT1002_00161 0.23 -0.9 177,876 - MIT1002_00161 0.43 -2.9 178,097 + +0.4 178,105 - +1.4 178,105 - +0.6 178,197 + MIT1002_00162 0.16 -0.3 178,197 + MIT1002_00162 0.16 +1.6 178,205 - MIT1002_00162 0.17 -0.6 178,205 - MIT1002_00162 0.17 +1.5 178,298 - MIT1002_00162 0.26 -0.0 178,320 - MIT1002_00162 0.28 +0.6 178,351 - MIT1002_00162 0.31 +1.5 178,380 + MIT1002_00162 0.33 +2.9 178,380 + MIT1002_00162 0.33 +0.5 178,380 + MIT1002_00162 0.33 +1.2 178,380 + MIT1002_00162 0.33 -0.1 178,460 + MIT1002_00162 0.41 +1.3 178,521 - MIT1002_00162 0.47 +0.4 178,607 + MIT1002_00162 0.55 +1.3 178,623 + MIT1002_00162 0.56 +0.2 178,648 + MIT1002_00162 0.59 +0.4 178,701 - MIT1002_00162 0.63 +0.3 178,763 - MIT1002_00162 0.69 -2.5 178,847 + MIT1002_00162 0.77 -0.7 178,993 + +2.0 179,012 + +2.0 179,012 + +1.5 179,020 - +0.7 179,051 - +0.4 179,064 + +0.0 179,064 + +0.3 179,072 - +1.9 179,072 - +2.3 179,072 - +0.7 179,072 - +1.0 179,074 + +0.4 179,082 - -0.1 179,083 + +0.4 179,139 - +0.5 179,162 - MIT1002_00163 0.13 -0.4 179,170 - MIT1002_00163 0.15 +0.9 179,212 + MIT1002_00163 0.23 +0.1 179,212 + MIT1002_00163 0.23 -0.8 179,226 - MIT1002_00163 0.26 +0.2 179,252 + MIT1002_00163 0.31 -0.8 179,280 - MIT1002_00163 0.36 -0.5 179,362 - MIT1002_00163 0.52 +0.9 179,398 - MIT1002_00163 0.59 -0.4 179,426 + MIT1002_00163 0.64 -0.2 179,426 + MIT1002_00163 0.64 +0.3 179,429 - MIT1002_00163 0.65 +0.4 179,462 + MIT1002_00163 0.71 -1.4 179,462 + MIT1002_00163 0.71 -1.1 179,470 - MIT1002_00163 0.73 -0.1 179,633 + +0.6 179,643 + +1.0 179,651 - -0.3 179,885 - -0.1 179,895 - -0.5 179,909 - +0.7 179,961 - +0.6 179,966 + -0.5 179,966 + +0.4 179,976 + +0.1 179,976 + +0.5 179,976 + +0.4 179,976 + +1.7 179,984 - +1.7 179,984 - -0.2 180,006 + +0.3
Or see this region's nucleotide sequence