Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00089

Experiment: monoculture; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00088 and MIT1002_00089 are separated by 212 nucleotidesMIT1002_00089 and MIT1002_00090 are separated by 2 nucleotides MIT1002_00088: MIT1002_00088 - hydroxyacylglutathione hydrolase, at 95,064 to 95,825 _00088 MIT1002_00089: MIT1002_00089 - putative ATPase, at 96,038 to 97,423 _00089 MIT1002_00090: MIT1002_00090 - hypothetical protein, at 97,426 to 98,538 _00090 Position (kb) 96 97 98Strain fitness (log2 ratio) -2 -1 0 1 2 3at 95.085 kb on - strandat 95.109 kb on + strandat 95.117 kb on - strandat 95.157 kb on + strand, within MIT1002_00088at 95.191 kb on + strand, within MIT1002_00088at 95.191 kb on + strand, within MIT1002_00088at 95.212 kb on + strand, within MIT1002_00088at 95.212 kb on + strand, within MIT1002_00088at 95.235 kb on + strand, within MIT1002_00088at 95.255 kb on - strand, within MIT1002_00088at 95.297 kb on - strand, within MIT1002_00088at 95.349 kb on + strand, within MIT1002_00088at 95.356 kb on + strand, within MIT1002_00088at 95.382 kb on - strand, within MIT1002_00088at 95.433 kb on - strand, within MIT1002_00088at 95.442 kb on + strand, within MIT1002_00088at 95.501 kb on - strand, within MIT1002_00088at 95.507 kb on + strand, within MIT1002_00088at 95.515 kb on - strand, within MIT1002_00088at 95.515 kb on - strand, within MIT1002_00088at 95.550 kb on - strand, within MIT1002_00088at 95.582 kb on + strand, within MIT1002_00088at 95.582 kb on + strand, within MIT1002_00088at 95.590 kb on - strand, within MIT1002_00088at 95.762 kb on - strandat 95.878 kb on + strandat 95.933 kb on + strandat 95.994 kb on + strandat 95.995 kb on - strandat 96.002 kb on - strandat 96.020 kb on - strandat 96.121 kb on - strandat 96.158 kb on - strandat 96.188 kb on - strand, within MIT1002_00089at 96.229 kb on + strand, within MIT1002_00089at 96.266 kb on + strand, within MIT1002_00089at 96.317 kb on + strand, within MIT1002_00089at 96.353 kb on + strand, within MIT1002_00089at 96.359 kb on - strand, within MIT1002_00089at 96.378 kb on + strand, within MIT1002_00089at 96.378 kb on + strand, within MIT1002_00089at 96.378 kb on + strand, within MIT1002_00089at 96.378 kb on + strand, within MIT1002_00089at 96.510 kb on - strand, within MIT1002_00089at 96.531 kb on - strand, within MIT1002_00089at 96.544 kb on + strand, within MIT1002_00089at 96.544 kb on + strand, within MIT1002_00089at 96.544 kb on + strand, within MIT1002_00089at 96.544 kb on + strand, within MIT1002_00089at 96.544 kb on + strand, within MIT1002_00089at 96.552 kb on - strand, within MIT1002_00089at 96.552 kb on - strand, within MIT1002_00089at 96.552 kb on - strand, within MIT1002_00089at 96.631 kb on - strand, within MIT1002_00089at 96.676 kb on + strand, within MIT1002_00089at 96.688 kb on + strand, within MIT1002_00089at 96.690 kb on - strand, within MIT1002_00089at 96.735 kb on + strand, within MIT1002_00089at 96.757 kb on - strand, within MIT1002_00089at 96.843 kb on - strand, within MIT1002_00089at 96.857 kb on - strand, within MIT1002_00089at 96.915 kb on + strand, within MIT1002_00089at 96.921 kb on + strand, within MIT1002_00089at 96.921 kb on + strand, within MIT1002_00089at 96.948 kb on - strand, within MIT1002_00089at 96.983 kb on + strand, within MIT1002_00089at 97.083 kb on + strand, within MIT1002_00089at 97.083 kb on + strand, within MIT1002_00089at 97.147 kb on + strand, within MIT1002_00089at 97.227 kb on - strand, within MIT1002_00089at 97.257 kb on + strand, within MIT1002_00089at 97.262 kb on - strand, within MIT1002_00089at 97.288 kb on - strandat 97.309 kb on + strandat 97.334 kb on - strandat 97.350 kb on + strandat 97.408 kb on + strandat 97.408 kb on + strandat 97.408 kb on + strandat 97.408 kb on + strandat 97.416 kb on - strandat 97.416 kb on - strandat 97.418 kb on + strandat 97.438 kb on + strandat 97.445 kb on - strandat 97.457 kb on + strandat 97.483 kb on - strandat 97.522 kb on + strandat 97.575 kb on + strand, within MIT1002_00090at 97.629 kb on - strand, within MIT1002_00090at 97.630 kb on - strand, within MIT1002_00090at 97.638 kb on + strand, within MIT1002_00090at 97.646 kb on - strand, within MIT1002_00090at 97.707 kb on + strand, within MIT1002_00090at 97.707 kb on + strand, within MIT1002_00090at 97.707 kb on + strand, within MIT1002_00090at 97.715 kb on - strand, within MIT1002_00090at 97.715 kb on - strand, within MIT1002_00090at 97.732 kb on - strand, within MIT1002_00090at 97.819 kb on + strand, within MIT1002_00090at 97.950 kb on + strand, within MIT1002_00090at 97.978 kb on - strand, within MIT1002_00090at 98.042 kb on + strand, within MIT1002_00090at 98.050 kb on - strand, within MIT1002_00090at 98.076 kb on + strand, within MIT1002_00090at 98.076 kb on + strand, within MIT1002_00090at 98.076 kb on + strand, within MIT1002_00090at 98.084 kb on - strand, within MIT1002_00090at 98.084 kb on - strand, within MIT1002_00090at 98.084 kb on - strand, within MIT1002_00090at 98.093 kb on + strand, within MIT1002_00090at 98.102 kb on + strand, within MIT1002_00090at 98.135 kb on + strand, within MIT1002_00090at 98.144 kb on + strand, within MIT1002_00090at 98.169 kb on + strand, within MIT1002_00090at 98.169 kb on + strand, within MIT1002_00090at 98.177 kb on - strand, within MIT1002_00090

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4
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95,085 - +0.3
95,109 + +0.8
95,117 - -0.4
95,157 + MIT1002_00088 0.12 -0.7
95,191 + MIT1002_00088 0.17 -0.3
95,191 + MIT1002_00088 0.17 -0.2
95,212 + MIT1002_00088 0.19 -0.8
95,212 + MIT1002_00088 0.19 -0.1
95,235 + MIT1002_00088 0.22 -0.3
95,255 - MIT1002_00088 0.25 -1.2
95,297 - MIT1002_00088 0.31 -1.0
95,349 + MIT1002_00088 0.37 +0.7
95,356 + MIT1002_00088 0.38 +0.8
95,382 - MIT1002_00088 0.42 +0.6
95,433 - MIT1002_00088 0.48 -0.3
95,442 + MIT1002_00088 0.50 -1.7
95,501 - MIT1002_00088 0.57 -1.9
95,507 + MIT1002_00088 0.58 +0.6
95,515 - MIT1002_00088 0.59 +0.3
95,515 - MIT1002_00088 0.59 +0.1
95,550 - MIT1002_00088 0.64 -0.1
95,582 + MIT1002_00088 0.68 +1.2
95,582 + MIT1002_00088 0.68 +0.3
95,590 - MIT1002_00088 0.69 -0.5
95,762 - -1.6
95,878 + -1.0
95,933 + +1.6
95,994 + -1.6
95,995 - -0.3
96,002 - +0.2
96,020 - +0.1
96,121 - -1.1
96,158 - +0.9
96,188 - MIT1002_00089 0.11 +0.4
96,229 + MIT1002_00089 0.14 +1.2
96,266 + MIT1002_00089 0.16 +0.1
96,317 + MIT1002_00089 0.20 -0.0
96,353 + MIT1002_00089 0.23 +0.7
96,359 - MIT1002_00089 0.23 -0.6
96,378 + MIT1002_00089 0.25 +0.4
96,378 + MIT1002_00089 0.25 -0.3
96,378 + MIT1002_00089 0.25 -0.1
96,378 + MIT1002_00089 0.25 -2.5
96,510 - MIT1002_00089 0.34 -0.6
96,531 - MIT1002_00089 0.36 -0.9
96,544 + MIT1002_00089 0.37 -0.1
96,544 + MIT1002_00089 0.37 +0.2
96,544 + MIT1002_00089 0.37 +1.6
96,544 + MIT1002_00089 0.37 -1.0
96,544 + MIT1002_00089 0.37 -2.2
96,552 - MIT1002_00089 0.37 +2.4
96,552 - MIT1002_00089 0.37 +0.5
96,552 - MIT1002_00089 0.37 -0.4
96,631 - MIT1002_00089 0.43 -0.3
96,676 + MIT1002_00089 0.46 -0.1
96,688 + MIT1002_00089 0.47 +0.3
96,690 - MIT1002_00089 0.47 -0.7
96,735 + MIT1002_00089 0.50 +1.7
96,757 - MIT1002_00089 0.52 +0.1
96,843 - MIT1002_00089 0.58 +0.2
96,857 - MIT1002_00089 0.59 -1.1
96,915 + MIT1002_00089 0.63 +0.9
96,921 + MIT1002_00089 0.64 +0.2
96,921 + MIT1002_00089 0.64 -2.2
96,948 - MIT1002_00089 0.66 +0.0
96,983 + MIT1002_00089 0.68 +0.6
97,083 + MIT1002_00089 0.75 -0.4
97,083 + MIT1002_00089 0.75 +0.4
97,147 + MIT1002_00089 0.80 +0.6
97,227 - MIT1002_00089 0.86 -1.7
97,257 + MIT1002_00089 0.88 -0.6
97,262 - MIT1002_00089 0.88 +1.8
97,288 - +0.0
97,309 + +0.7
97,334 - +1.5
97,350 + -1.2
97,408 + +0.1
97,408 + -0.2
97,408 + -0.1
97,408 + -0.4
97,416 - -1.5
97,416 - +0.2
97,418 + -0.6
97,438 + -1.4
97,445 - +0.3
97,457 + -0.9
97,483 - -0.4
97,522 + +0.5
97,575 + MIT1002_00090 0.13 -0.8
97,629 - MIT1002_00090 0.18 +1.4
97,630 - MIT1002_00090 0.18 -0.5
97,638 + MIT1002_00090 0.19 -2.0
97,646 - MIT1002_00090 0.20 +0.2
97,707 + MIT1002_00090 0.25 -1.8
97,707 + MIT1002_00090 0.25 -0.6
97,707 + MIT1002_00090 0.25 +1.6
97,715 - MIT1002_00090 0.26 -0.5
97,715 - MIT1002_00090 0.26 +0.0
97,732 - MIT1002_00090 0.27 +0.1
97,819 + MIT1002_00090 0.35 +0.3
97,950 + MIT1002_00090 0.47 -2.2
97,978 - MIT1002_00090 0.50 +0.4
98,042 + MIT1002_00090 0.55 -0.6
98,050 - MIT1002_00090 0.56 -1.0
98,076 + MIT1002_00090 0.58 +3.2
98,076 + MIT1002_00090 0.58 +0.2
98,076 + MIT1002_00090 0.58 -0.6
98,084 - MIT1002_00090 0.59 -0.0
98,084 - MIT1002_00090 0.59 +0.2
98,084 - MIT1002_00090 0.59 -2.2
98,093 + MIT1002_00090 0.60 +1.0
98,102 + MIT1002_00090 0.61 -1.0
98,135 + MIT1002_00090 0.64 +0.5
98,144 + MIT1002_00090 0.65 -0.2
98,169 + MIT1002_00090 0.67 +0.5
98,169 + MIT1002_00090 0.67 +1.8
98,177 - MIT1002_00090 0.67 -0.6

Or see this region's nucleotide sequence