Experiment: monoculture; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00067 and MIT1002_00068 are separated by 103 nucleotides MIT1002_00068 and MIT1002_00069 overlap by 4 nucleotides MIT1002_00069 and MIT1002_00070 are separated by 101 nucleotides MIT1002_00070 and MIT1002_00071 are separated by 112 nucleotides
MIT1002_00067: MIT1002_00067 - flagellar basal body-associated protein FliL-like protein, at 72,443 to 72,856
_00067
MIT1002_00068: MIT1002_00068 - Chorismate--pyruvate lyase, at 72,960 to 73,574
_00068
MIT1002_00069: MIT1002_00069 - 4-hydroxybenzoate octaprenyltransferase, at 73,571 to 74,428
_00069
MIT1002_00070: MIT1002_00070 - Membrane fusogenic activity, at 74,530 to 74,781
_00070
MIT1002_00071: MIT1002_00071 - ATP-dependent DNA helicase rep, at 74,894 to 76,909
_00071
Position (kb) 73
74
75 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 72.623 kb on - strand, within MIT1002_00067 at 72.666 kb on - strand, within MIT1002_00067 at 72.666 kb on - strand, within MIT1002_00067 at 72.691 kb on + strand, within MIT1002_00067 at 72.779 kb on + strand, within MIT1002_00067 at 72.787 kb on - strand, within MIT1002_00067 at 72.787 kb on - strand, within MIT1002_00067 at 72.856 kb on - strand at 73.053 kb on + strand, within MIT1002_00068 at 73.125 kb on + strand, within MIT1002_00068 at 73.131 kb on - strand, within MIT1002_00068 at 73.133 kb on + strand, within MIT1002_00068 at 73.200 kb on - strand, within MIT1002_00068 at 73.229 kb on + strand, within MIT1002_00068 at 73.299 kb on + strand, within MIT1002_00068 at 73.307 kb on - strand, within MIT1002_00068 at 73.307 kb on - strand, within MIT1002_00068 at 73.344 kb on - strand, within MIT1002_00068 at 73.397 kb on + strand, within MIT1002_00068 at 73.397 kb on + strand, within MIT1002_00068 at 73.445 kb on - strand, within MIT1002_00068 at 73.495 kb on + strand, within MIT1002_00068 at 73.524 kb on + strand at 74.498 kb on - strand at 74.527 kb on - strand at 74.557 kb on - strand, within MIT1002_00070
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4 remove 72,623 - MIT1002_00067 0.43 -1.1 72,666 - MIT1002_00067 0.54 +1.1 72,666 - MIT1002_00067 0.54 +0.5 72,691 + MIT1002_00067 0.60 +0.6 72,779 + MIT1002_00067 0.81 -0.5 72,787 - MIT1002_00067 0.83 -1.3 72,787 - MIT1002_00067 0.83 +0.4 72,856 - -0.5 73,053 + MIT1002_00068 0.15 -1.9 73,125 + MIT1002_00068 0.27 -2.5 73,131 - MIT1002_00068 0.28 -1.9 73,133 + MIT1002_00068 0.28 -0.4 73,200 - MIT1002_00068 0.39 -4.0 73,229 + MIT1002_00068 0.44 -4.2 73,299 + MIT1002_00068 0.55 +0.6 73,307 - MIT1002_00068 0.56 -1.9 73,307 - MIT1002_00068 0.56 -3.6 73,344 - MIT1002_00068 0.62 -4.5 73,397 + MIT1002_00068 0.71 -2.5 73,397 + MIT1002_00068 0.71 -3.6 73,445 - MIT1002_00068 0.79 -3.1 73,495 + MIT1002_00068 0.87 -3.0 73,524 + -1.5 74,498 - -0.4 74,527 - +0.1 74,557 - MIT1002_00070 0.11 -0.5
Or see this region's nucleotide sequence