Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18625 and LRK53_RS18630 are separated by 99 nucleotides LRK53_RS18630 and LRK53_RS18635 overlap by 4 nucleotides
LRK53_RS18625: LRK53_RS18625 - TolC family protein, at 108,610 to 110,025
_RS18625
LRK53_RS18630: LRK53_RS18630 - glycosyltransferase family 39 protein, at 110,125 to 111,840
_RS18630
LRK53_RS18635: LRK53_RS18635 - glycosyltransferase family 2 protein, at 111,837 to 112,856
_RS18635
Position (kb) 110
111
112 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 109.149 kb on - strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.236 kb on + strand, within LRK53_RS18625 at 109.237 kb on - strand, within LRK53_RS18625 at 109.237 kb on - strand, within LRK53_RS18625 at 109.237 kb on - strand, within LRK53_RS18625 at 109.237 kb on - strand, within LRK53_RS18625 at 109.237 kb on - strand, within LRK53_RS18625 at 109.237 kb on - strand, within LRK53_RS18625 at 109.237 kb on - strand, within LRK53_RS18625 at 109.237 kb on - strand, within LRK53_RS18625 at 109.237 kb on - strand, within LRK53_RS18625 at 109.237 kb on - strand, within LRK53_RS18625 at 109.493 kb on + strand, within LRK53_RS18625 at 109.493 kb on + strand, within LRK53_RS18625 at 109.551 kb on + strand, within LRK53_RS18625 at 109.552 kb on - strand, within LRK53_RS18625 at 109.628 kb on - strand, within LRK53_RS18625 at 109.628 kb on - strand, within LRK53_RS18625 at 109.628 kb on - strand, within LRK53_RS18625 at 109.628 kb on - strand, within LRK53_RS18625 at 109.628 kb on - strand, within LRK53_RS18625 at 109.685 kb on + strand, within LRK53_RS18625 at 109.685 kb on + strand, within LRK53_RS18625 at 109.685 kb on + strand, within LRK53_RS18625 at 109.685 kb on + strand, within LRK53_RS18625 at 109.686 kb on - strand, within LRK53_RS18625 at 109.686 kb on - strand, within LRK53_RS18625 at 109.686 kb on - strand, within LRK53_RS18625 at 109.686 kb on - strand, within LRK53_RS18625 at 109.790 kb on + strand, within LRK53_RS18625 at 109.790 kb on + strand, within LRK53_RS18625 at 109.790 kb on + strand, within LRK53_RS18625 at 109.790 kb on + strand, within LRK53_RS18625 at 109.790 kb on + strand, within LRK53_RS18625 at 109.791 kb on - strand, within LRK53_RS18625 at 109.791 kb on - strand, within LRK53_RS18625 at 109.791 kb on - strand, within LRK53_RS18625 at 109.791 kb on - strand, within LRK53_RS18625 at 109.793 kb on + strand, within LRK53_RS18625 at 109.793 kb on + strand, within LRK53_RS18625 at 109.793 kb on + strand, within LRK53_RS18625 at 109.794 kb on - strand, within LRK53_RS18625 at 109.794 kb on - strand, within LRK53_RS18625 at 109.794 kb on - strand, within LRK53_RS18625 at 110.011 kb on - strand at 110.011 kb on - strand at 110.011 kb on - strand at 110.082 kb on + strand at 110.082 kb on + strand at 110.082 kb on + strand at 110.082 kb on + strand at 110.082 kb on + strand at 110.082 kb on + strand at 110.082 kb on + strand at 110.082 kb on + strand at 110.083 kb on - strand at 110.083 kb on - strand at 110.083 kb on - strand at 110.083 kb on - strand at 110.083 kb on - strand at 110.083 kb on - strand at 110.083 kb on - strand at 110.083 kb on - strand at 110.169 kb on + strand at 110.312 kb on + strand, within LRK53_RS18630 at 110.391 kb on - strand, within LRK53_RS18630 at 110.391 kb on - strand, within LRK53_RS18630 at 110.391 kb on - strand, within LRK53_RS18630 at 110.391 kb on - strand, within LRK53_RS18630 at 110.408 kb on - strand, within LRK53_RS18630 at 110.411 kb on + strand, within LRK53_RS18630 at 110.411 kb on + strand, within LRK53_RS18630 at 110.411 kb on + strand, within LRK53_RS18630 at 110.412 kb on - strand, within LRK53_RS18630 at 110.412 kb on - strand, within LRK53_RS18630 at 110.412 kb on - strand, within LRK53_RS18630 at 110.428 kb on + strand, within LRK53_RS18630 at 110.428 kb on + strand, within LRK53_RS18630 at 110.428 kb on + strand, within LRK53_RS18630 at 110.428 kb on + strand, within LRK53_RS18630 at 110.428 kb on + strand, within LRK53_RS18630 at 110.429 kb on - strand, within LRK53_RS18630 at 110.429 kb on - strand, within LRK53_RS18630 at 110.429 kb on - strand, within LRK53_RS18630 at 110.598 kb on + strand, within LRK53_RS18630 at 110.598 kb on + strand, within LRK53_RS18630 at 110.599 kb on - strand, within LRK53_RS18630 at 110.599 kb on - strand, within LRK53_RS18630 at 110.599 kb on - strand, within LRK53_RS18630 at 110.599 kb on - strand, within LRK53_RS18630 at 110.599 kb on - strand, within LRK53_RS18630 at 110.665 kb on + strand, within LRK53_RS18630 at 110.665 kb on + strand, within LRK53_RS18630 at 110.666 kb on - strand, within LRK53_RS18630 at 110.666 kb on - strand, within LRK53_RS18630 at 110.666 kb on - strand, within LRK53_RS18630 at 110.666 kb on - strand, within LRK53_RS18630 at 110.838 kb on - strand, within LRK53_RS18630 at 110.845 kb on + strand, within LRK53_RS18630 at 110.845 kb on + strand, within LRK53_RS18630 at 110.845 kb on + strand, within LRK53_RS18630 at 110.845 kb on + strand, within LRK53_RS18630 at 110.846 kb on - strand, within LRK53_RS18630 at 110.846 kb on - strand, within LRK53_RS18630 at 110.931 kb on + strand, within LRK53_RS18630 at 111.077 kb on + strand, within LRK53_RS18630 at 111.078 kb on - strand, within LRK53_RS18630 at 111.148 kb on + strand, within LRK53_RS18630 at 111.149 kb on - strand, within LRK53_RS18630 at 111.149 kb on - strand, within LRK53_RS18630 at 111.149 kb on - strand, within LRK53_RS18630 at 111.178 kb on + strand, within LRK53_RS18630 at 111.179 kb on - strand, within LRK53_RS18630 at 111.399 kb on + strand, within LRK53_RS18630 at 111.399 kb on + strand, within LRK53_RS18630 at 111.399 kb on + strand, within LRK53_RS18630 at 111.399 kb on + strand, within LRK53_RS18630 at 111.400 kb on - strand, within LRK53_RS18630 at 111.400 kb on - strand, within LRK53_RS18630 at 111.400 kb on - strand, within LRK53_RS18630 at 111.400 kb on - strand, within LRK53_RS18630 at 111.421 kb on + strand, within LRK53_RS18630 at 111.422 kb on - strand, within LRK53_RS18630 at 111.436 kb on + strand, within LRK53_RS18630 at 111.437 kb on - strand, within LRK53_RS18630 at 111.437 kb on - strand, within LRK53_RS18630 at 111.473 kb on - strand, within LRK53_RS18630 at 111.569 kb on + strand, within LRK53_RS18630 at 111.569 kb on + strand, within LRK53_RS18630 at 111.570 kb on - strand, within LRK53_RS18630 at 111.570 kb on - strand, within LRK53_RS18630 at 111.590 kb on + strand, within LRK53_RS18630 at 111.591 kb on - strand, within LRK53_RS18630 at 111.789 kb on - strand at 111.943 kb on + strand, within LRK53_RS18635 at 111.943 kb on + strand, within LRK53_RS18635 at 111.943 kb on + strand, within LRK53_RS18635 at 111.944 kb on - strand, within LRK53_RS18635 at 111.971 kb on - strand, within LRK53_RS18635 at 111.971 kb on - strand, within LRK53_RS18635 at 111.971 kb on - strand, within LRK53_RS18635 at 111.986 kb on - strand, within LRK53_RS18635 at 112.111 kb on + strand, within LRK53_RS18635 at 112.112 kb on - strand, within LRK53_RS18635 at 112.219 kb on + strand, within LRK53_RS18635 at 112.220 kb on - strand, within LRK53_RS18635 at 112.220 kb on - strand, within LRK53_RS18635 at 112.220 kb on - strand, within LRK53_RS18635 at 112.220 kb on - strand, within LRK53_RS18635 at 112.261 kb on + strand, within LRK53_RS18635 at 112.261 kb on + strand, within LRK53_RS18635 at 112.261 kb on + strand, within LRK53_RS18635 at 112.261 kb on + strand, within LRK53_RS18635 at 112.261 kb on + strand, within LRK53_RS18635 at 112.261 kb on + strand, within LRK53_RS18635 at 112.261 kb on + strand, within LRK53_RS18635 at 112.261 kb on + strand, within LRK53_RS18635 at 112.262 kb on - strand, within LRK53_RS18635 at 112.262 kb on - strand, within LRK53_RS18635 at 112.262 kb on - strand, within LRK53_RS18635 at 112.262 kb on - strand, within LRK53_RS18635 at 112.262 kb on - strand, within LRK53_RS18635 at 112.262 kb on - strand, within LRK53_RS18635 at 112.262 kb on - strand, within LRK53_RS18635 at 112.383 kb on - strand, within LRK53_RS18635 at 112.383 kb on - strand, within LRK53_RS18635 at 112.490 kb on - strand, within LRK53_RS18635 at 112.535 kb on + strand, within LRK53_RS18635 at 112.536 kb on - strand, within LRK53_RS18635 at 112.536 kb on - strand, within LRK53_RS18635 at 112.695 kb on + strand, within LRK53_RS18635 at 112.695 kb on + strand, within LRK53_RS18635 at 112.696 kb on - strand, within LRK53_RS18635 at 112.696 kb on - strand, within LRK53_RS18635 at 112.696 kb on - strand, within LRK53_RS18635 at 112.732 kb on + strand, within LRK53_RS18635 at 112.732 kb on + strand, within LRK53_RS18635 at 112.732 kb on + strand, within LRK53_RS18635 at 112.732 kb on + strand, within LRK53_RS18635 at 112.732 kb on + strand, within LRK53_RS18635 at 112.732 kb on + strand, within LRK53_RS18635 at 112.732 kb on + strand, within LRK53_RS18635 at 112.732 kb on + strand, within LRK53_RS18635 at 112.733 kb on - strand, within LRK53_RS18635 at 112.733 kb on - strand, within LRK53_RS18635 at 112.733 kb on - strand, within LRK53_RS18635 at 112.733 kb on - strand, within LRK53_RS18635 at 112.733 kb on - strand, within LRK53_RS18635 at 112.733 kb on - strand, within LRK53_RS18635 at 112.733 kb on - strand, within LRK53_RS18635 at 112.733 kb on - strand, within LRK53_RS18635 at 112.816 kb on + strand at 112.817 kb on - strand at 112.817 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 109,149 - LRK53_RS18625 0.38 +0.1 109,236 + LRK53_RS18625 0.44 +0.5 109,236 + LRK53_RS18625 0.44 -2.0 109,236 + LRK53_RS18625 0.44 -0.7 109,236 + LRK53_RS18625 0.44 -0.3 109,236 + LRK53_RS18625 0.44 +0.1 109,236 + LRK53_RS18625 0.44 -0.0 109,236 + LRK53_RS18625 0.44 -0.5 109,236 + LRK53_RS18625 0.44 +0.6 109,236 + LRK53_RS18625 0.44 -2.0 109,236 + LRK53_RS18625 0.44 +0.9 109,236 + LRK53_RS18625 0.44 +0.1 109,236 + LRK53_RS18625 0.44 -2.2 109,237 - LRK53_RS18625 0.44 -0.2 109,237 - LRK53_RS18625 0.44 +0.5 109,237 - LRK53_RS18625 0.44 -0.4 109,237 - LRK53_RS18625 0.44 +0.2 109,237 - LRK53_RS18625 0.44 -1.7 109,237 - LRK53_RS18625 0.44 +0.4 109,237 - LRK53_RS18625 0.44 -0.4 109,237 - LRK53_RS18625 0.44 -0.1 109,237 - LRK53_RS18625 0.44 +0.7 109,237 - LRK53_RS18625 0.44 -2.8 109,493 + LRK53_RS18625 0.62 -0.2 109,493 + LRK53_RS18625 0.62 -0.3 109,551 + LRK53_RS18625 0.66 -0.9 109,552 - LRK53_RS18625 0.67 +1.1 109,628 - LRK53_RS18625 0.72 -1.6 109,628 - LRK53_RS18625 0.72 -1.9 109,628 - LRK53_RS18625 0.72 -1.2 109,628 - LRK53_RS18625 0.72 -1.0 109,628 - LRK53_RS18625 0.72 -1.2 109,685 + LRK53_RS18625 0.76 +1.8 109,685 + LRK53_RS18625 0.76 -0.4 109,685 + LRK53_RS18625 0.76 +0.3 109,685 + LRK53_RS18625 0.76 +1.0 109,686 - LRK53_RS18625 0.76 -0.7 109,686 - LRK53_RS18625 0.76 -1.2 109,686 - LRK53_RS18625 0.76 -1.4 109,686 - LRK53_RS18625 0.76 +0.1 109,790 + LRK53_RS18625 0.83 -0.6 109,790 + LRK53_RS18625 0.83 -2.6 109,790 + LRK53_RS18625 0.83 -1.4 109,790 + LRK53_RS18625 0.83 +0.2 109,790 + LRK53_RS18625 0.83 -1.3 109,791 - LRK53_RS18625 0.83 -1.7 109,791 - LRK53_RS18625 0.83 -2.6 109,791 - LRK53_RS18625 0.83 -1.3 109,791 - LRK53_RS18625 0.83 -1.1 109,793 + LRK53_RS18625 0.84 +0.6 109,793 + LRK53_RS18625 0.84 -1.4 109,793 + LRK53_RS18625 0.84 +1.4 109,794 - LRK53_RS18625 0.84 +2.3 109,794 - LRK53_RS18625 0.84 -2.6 109,794 - LRK53_RS18625 0.84 -0.6 110,011 - -1.6 110,011 - -1.3 110,011 - +0.9 110,082 + -2.4 110,082 + -1.4 110,082 + -0.2 110,082 + -0.1 110,082 + -1.3 110,082 + +0.3 110,082 + -0.1 110,082 + -1.4 110,083 - -0.5 110,083 - +0.3 110,083 - +0.3 110,083 - +0.4 110,083 - +0.9 110,083 - +0.3 110,083 - -1.1 110,083 - -2.0 110,169 + -1.2 110,312 + LRK53_RS18630 0.11 -0.6 110,391 - LRK53_RS18630 0.16 +0.7 110,391 - LRK53_RS18630 0.16 -1.3 110,391 - LRK53_RS18630 0.16 -1.3 110,391 - LRK53_RS18630 0.16 -1.6 110,408 - LRK53_RS18630 0.16 +2.3 110,411 + LRK53_RS18630 0.17 +0.4 110,411 + LRK53_RS18630 0.17 -2.6 110,411 + LRK53_RS18630 0.17 -1.3 110,412 - LRK53_RS18630 0.17 -0.1 110,412 - LRK53_RS18630 0.17 -0.1 110,412 - LRK53_RS18630 0.17 +0.7 110,428 + LRK53_RS18630 0.18 -0.7 110,428 + LRK53_RS18630 0.18 +0.2 110,428 + LRK53_RS18630 0.18 +0.8 110,428 + LRK53_RS18630 0.18 -0.1 110,428 + LRK53_RS18630 0.18 -0.1 110,429 - LRK53_RS18630 0.18 -1.5 110,429 - LRK53_RS18630 0.18 +0.7 110,429 - LRK53_RS18630 0.18 -0.2 110,598 + LRK53_RS18630 0.28 +1.0 110,598 + LRK53_RS18630 0.28 -0.4 110,599 - LRK53_RS18630 0.28 -0.9 110,599 - LRK53_RS18630 0.28 +1.9 110,599 - LRK53_RS18630 0.28 +0.3 110,599 - LRK53_RS18630 0.28 -0.7 110,599 - LRK53_RS18630 0.28 -1.7 110,665 + LRK53_RS18630 0.31 -1.9 110,665 + LRK53_RS18630 0.31 -1.3 110,666 - LRK53_RS18630 0.32 -1.0 110,666 - LRK53_RS18630 0.32 -0.1 110,666 - LRK53_RS18630 0.32 -1.1 110,666 - LRK53_RS18630 0.32 -0.6 110,838 - LRK53_RS18630 0.42 -0.7 110,845 + LRK53_RS18630 0.42 -3.5 110,845 + LRK53_RS18630 0.42 +1.5 110,845 + LRK53_RS18630 0.42 +0.9 110,845 + LRK53_RS18630 0.42 +1.9 110,846 - LRK53_RS18630 0.42 -1.1 110,846 - LRK53_RS18630 0.42 -2.6 110,931 + LRK53_RS18630 0.47 +1.6 111,077 + LRK53_RS18630 0.55 -3.3 111,078 - LRK53_RS18630 0.56 +1.7 111,148 + LRK53_RS18630 0.60 +0.5 111,149 - LRK53_RS18630 0.60 -2.1 111,149 - LRK53_RS18630 0.60 -0.3 111,149 - LRK53_RS18630 0.60 +0.1 111,178 + LRK53_RS18630 0.61 -0.4 111,179 - LRK53_RS18630 0.61 -1.7 111,399 + LRK53_RS18630 0.74 -1.1 111,399 + LRK53_RS18630 0.74 +0.6 111,399 + LRK53_RS18630 0.74 -1.9 111,399 + LRK53_RS18630 0.74 -0.3 111,400 - LRK53_RS18630 0.74 -1.4 111,400 - LRK53_RS18630 0.74 -1.3 111,400 - LRK53_RS18630 0.74 -1.3 111,400 - LRK53_RS18630 0.74 +0.1 111,421 + LRK53_RS18630 0.76 -0.3 111,422 - LRK53_RS18630 0.76 -0.1 111,436 + LRK53_RS18630 0.76 +1.5 111,437 - LRK53_RS18630 0.76 -2.4 111,437 - LRK53_RS18630 0.76 +0.9 111,473 - LRK53_RS18630 0.79 +0.5 111,569 + LRK53_RS18630 0.84 +0.6 111,569 + LRK53_RS18630 0.84 -0.6 111,570 - LRK53_RS18630 0.84 -1.3 111,570 - LRK53_RS18630 0.84 -0.3 111,590 + LRK53_RS18630 0.85 -1.1 111,591 - LRK53_RS18630 0.85 -0.9 111,789 - -0.3 111,943 + LRK53_RS18635 0.10 +0.9 111,943 + LRK53_RS18635 0.10 -1.3 111,943 + LRK53_RS18635 0.10 +0.7 111,944 - LRK53_RS18635 0.10 -0.4 111,971 - LRK53_RS18635 0.13 -2.1 111,971 - LRK53_RS18635 0.13 +0.8 111,971 - LRK53_RS18635 0.13 -0.4 111,986 - LRK53_RS18635 0.15 +0.2 112,111 + LRK53_RS18635 0.27 -0.1 112,112 - LRK53_RS18635 0.27 -2.0 112,219 + LRK53_RS18635 0.37 -0.1 112,220 - LRK53_RS18635 0.38 +0.3 112,220 - LRK53_RS18635 0.38 -0.7 112,220 - LRK53_RS18635 0.38 -0.1 112,220 - LRK53_RS18635 0.38 -0.4 112,261 + LRK53_RS18635 0.42 +0.2 112,261 + LRK53_RS18635 0.42 -0.1 112,261 + LRK53_RS18635 0.42 -0.7 112,261 + LRK53_RS18635 0.42 -2.1 112,261 + LRK53_RS18635 0.42 -3.1 112,261 + LRK53_RS18635 0.42 +0.4 112,261 + LRK53_RS18635 0.42 -1.6 112,261 + LRK53_RS18635 0.42 -1.2 112,262 - LRK53_RS18635 0.42 +0.4 112,262 - LRK53_RS18635 0.42 -0.4 112,262 - LRK53_RS18635 0.42 +0.2 112,262 - LRK53_RS18635 0.42 -0.9 112,262 - LRK53_RS18635 0.42 -2.1 112,262 - LRK53_RS18635 0.42 +0.1 112,262 - LRK53_RS18635 0.42 +0.7 112,383 - LRK53_RS18635 0.54 -0.5 112,383 - LRK53_RS18635 0.54 +1.3 112,490 - LRK53_RS18635 0.64 -0.1 112,535 + LRK53_RS18635 0.68 +1.1 112,536 - LRK53_RS18635 0.69 -0.5 112,536 - LRK53_RS18635 0.69 -0.7 112,695 + LRK53_RS18635 0.84 -2.1 112,695 + LRK53_RS18635 0.84 -0.4 112,696 - LRK53_RS18635 0.84 -1.7 112,696 - LRK53_RS18635 0.84 -2.0 112,696 - LRK53_RS18635 0.84 -1.6 112,732 + LRK53_RS18635 0.88 +0.6 112,732 + LRK53_RS18635 0.88 -1.8 112,732 + LRK53_RS18635 0.88 -0.3 112,732 + LRK53_RS18635 0.88 -1.0 112,732 + LRK53_RS18635 0.88 -0.7 112,732 + LRK53_RS18635 0.88 +0.9 112,732 + LRK53_RS18635 0.88 -2.0 112,732 + LRK53_RS18635 0.88 -0.4 112,733 - LRK53_RS18635 0.88 -0.1 112,733 - LRK53_RS18635 0.88 -1.5 112,733 - LRK53_RS18635 0.88 +0.7 112,733 - LRK53_RS18635 0.88 -0.7 112,733 - LRK53_RS18635 0.88 -0.3 112,733 - LRK53_RS18635 0.88 +0.5 112,733 - LRK53_RS18635 0.88 -2.4 112,733 - LRK53_RS18635 0.88 +1.3 112,816 + -0.1 112,817 - +0.3 112,817 - +1.1
Or see this region's nucleotide sequence