Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18590 and LRK53_RS18595 are separated by 357 nucleotides LRK53_RS18595 and LRK53_RS18600 are separated by 89 nucleotides LRK53_RS18600 and LRK53_RS18605 are separated by 84 nucleotides
LRK53_RS18590: LRK53_RS18590 - Tn3 family transposase, at 97,402 to 100,395
_RS18590
LRK53_RS18595: LRK53_RS18595 - GtrA family protein, at 100,753 to 101,154
_RS18595
LRK53_RS18600: LRK53_RS18600 - MFS transporter, at 101,244 to 102,425
_RS18600
LRK53_RS18605: LRK53_RS18605 - HAMP domain-containing histidine kinase, at 102,510 to 103,718
_RS18605
Position (kb) 101
102
103 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 100.633 kb on + strand at 100.633 kb on + strand at 100.634 kb on - strand at 100.634 kb on - strand at 100.653 kb on + strand at 100.677 kb on + strand at 100.718 kb on - strand at 100.755 kb on - strand at 100.784 kb on - strand at 100.828 kb on + strand, within LRK53_RS18595 at 100.828 kb on + strand, within LRK53_RS18595 at 100.828 kb on + strand, within LRK53_RS18595 at 100.829 kb on - strand, within LRK53_RS18595 at 100.913 kb on + strand, within LRK53_RS18595 at 100.914 kb on - strand, within LRK53_RS18595 at 100.941 kb on + strand, within LRK53_RS18595 at 100.941 kb on + strand, within LRK53_RS18595 at 100.996 kb on + strand, within LRK53_RS18595 at 101.042 kb on + strand, within LRK53_RS18595 at 101.069 kb on + strand, within LRK53_RS18595 at 101.069 kb on + strand, within LRK53_RS18595 at 101.069 kb on + strand, within LRK53_RS18595 at 101.075 kb on - strand, within LRK53_RS18595 at 101.162 kb on + strand at 101.162 kb on + strand at 101.163 kb on - strand at 101.163 kb on - strand at 101.163 kb on - strand at 101.225 kb on + strand at 101.225 kb on + strand at 101.226 kb on - strand at 101.226 kb on - strand at 101.250 kb on - strand at 101.289 kb on + strand at 101.290 kb on - strand at 101.290 kb on - strand at 101.392 kb on - strand, within LRK53_RS18600 at 101.503 kb on + strand, within LRK53_RS18600 at 101.503 kb on + strand, within LRK53_RS18600 at 101.504 kb on - strand, within LRK53_RS18600 at 101.534 kb on + strand, within LRK53_RS18600 at 101.534 kb on + strand, within LRK53_RS18600 at 101.535 kb on - strand, within LRK53_RS18600 at 101.572 kb on + strand, within LRK53_RS18600 at 101.572 kb on + strand, within LRK53_RS18600 at 101.696 kb on + strand, within LRK53_RS18600 at 101.697 kb on - strand, within LRK53_RS18600 at 101.703 kb on - strand, within LRK53_RS18600 at 101.721 kb on + strand, within LRK53_RS18600 at 101.722 kb on - strand, within LRK53_RS18600 at 101.722 kb on - strand, within LRK53_RS18600 at 101.722 kb on - strand, within LRK53_RS18600 at 101.722 kb on - strand, within LRK53_RS18600 at 101.722 kb on - strand, within LRK53_RS18600 at 101.722 kb on - strand, within LRK53_RS18600 at 101.995 kb on + strand, within LRK53_RS18600 at 101.995 kb on + strand, within LRK53_RS18600 at 101.995 kb on + strand, within LRK53_RS18600 at 102.019 kb on + strand, within LRK53_RS18600 at 102.019 kb on + strand, within LRK53_RS18600 at 102.020 kb on - strand, within LRK53_RS18600 at 102.181 kb on + strand, within LRK53_RS18600 at 102.181 kb on + strand, within LRK53_RS18600 at 102.182 kb on - strand, within LRK53_RS18600 at 102.456 kb on + strand at 102.458 kb on + strand at 102.458 kb on + strand at 102.458 kb on + strand at 102.458 kb on + strand at 102.458 kb on + strand at 102.459 kb on - strand at 102.459 kb on - strand at 102.478 kb on + strand at 102.479 kb on - strand at 102.479 kb on - strand at 102.479 kb on - strand at 102.718 kb on - strand, within LRK53_RS18605 at 102.718 kb on - strand, within LRK53_RS18605 at 102.760 kb on - strand, within LRK53_RS18605 at 102.953 kb on + strand, within LRK53_RS18605 at 102.954 kb on - strand, within LRK53_RS18605 at 103.023 kb on + strand, within LRK53_RS18605 at 103.024 kb on - strand, within LRK53_RS18605 at 103.319 kb on + strand, within LRK53_RS18605 at 103.319 kb on + strand, within LRK53_RS18605 at 103.319 kb on + strand, within LRK53_RS18605 at 103.319 kb on + strand, within LRK53_RS18605 at 103.319 kb on + strand, within LRK53_RS18605 at 103.320 kb on - strand, within LRK53_RS18605 at 103.320 kb on - strand, within LRK53_RS18605 at 103.320 kb on - strand, within LRK53_RS18605 at 103.320 kb on - strand, within LRK53_RS18605 at 103.323 kb on + strand, within LRK53_RS18605 at 103.323 kb on + strand, within LRK53_RS18605 at 103.323 kb on + strand, within LRK53_RS18605 at 103.399 kb on + strand, within LRK53_RS18605 at 103.399 kb on + strand, within LRK53_RS18605 at 103.399 kb on + strand, within LRK53_RS18605 at 103.400 kb on - strand, within LRK53_RS18605 at 103.400 kb on - strand, within LRK53_RS18605 at 103.400 kb on - strand, within LRK53_RS18605
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 100,633 + -0.9 100,633 + -0.6 100,634 - -0.3 100,634 - -0.3 100,653 + +0.1 100,677 + -2.7 100,718 - +1.5 100,755 - +1.5 100,784 - -1.1 100,828 + LRK53_RS18595 0.19 -1.7 100,828 + LRK53_RS18595 0.19 -0.5 100,828 + LRK53_RS18595 0.19 -1.6 100,829 - LRK53_RS18595 0.19 +1.2 100,913 + LRK53_RS18595 0.40 -0.1 100,914 - LRK53_RS18595 0.40 +0.5 100,941 + LRK53_RS18595 0.47 -1.0 100,941 + LRK53_RS18595 0.47 +0.4 100,996 + LRK53_RS18595 0.60 -1.6 101,042 + LRK53_RS18595 0.72 +0.8 101,069 + LRK53_RS18595 0.79 -1.3 101,069 + LRK53_RS18595 0.79 +0.1 101,069 + LRK53_RS18595 0.79 -1.7 101,075 - LRK53_RS18595 0.80 +1.1 101,162 + -3.6 101,162 + -0.3 101,163 - -0.8 101,163 - -0.7 101,163 - -0.5 101,225 + +1.1 101,225 + +1.9 101,226 - -0.1 101,226 - +0.7 101,250 - +1.7 101,289 + +0.9 101,290 - -1.9 101,290 - -2.2 101,392 - LRK53_RS18600 0.13 -0.6 101,503 + LRK53_RS18600 0.22 +0.6 101,503 + LRK53_RS18600 0.22 +1.7 101,504 - LRK53_RS18600 0.22 +0.5 101,534 + LRK53_RS18600 0.25 +1.4 101,534 + LRK53_RS18600 0.25 +0.8 101,535 - LRK53_RS18600 0.25 +1.0 101,572 + LRK53_RS18600 0.28 +0.9 101,572 + LRK53_RS18600 0.28 -0.6 101,696 + LRK53_RS18600 0.38 -1.0 101,697 - LRK53_RS18600 0.38 -1.2 101,703 - LRK53_RS18600 0.39 -0.9 101,721 + LRK53_RS18600 0.40 +1.0 101,722 - LRK53_RS18600 0.40 +0.0 101,722 - LRK53_RS18600 0.40 -1.4 101,722 - LRK53_RS18600 0.40 -1.3 101,722 - LRK53_RS18600 0.40 -1.3 101,722 - LRK53_RS18600 0.40 -0.8 101,722 - LRK53_RS18600 0.40 -1.8 101,995 + LRK53_RS18600 0.64 -0.5 101,995 + LRK53_RS18600 0.64 +2.3 101,995 + LRK53_RS18600 0.64 -0.3 102,019 + LRK53_RS18600 0.66 -1.1 102,019 + LRK53_RS18600 0.66 -0.5 102,020 - LRK53_RS18600 0.66 -2.3 102,181 + LRK53_RS18600 0.79 +1.1 102,181 + LRK53_RS18600 0.79 +1.2 102,182 - LRK53_RS18600 0.79 +0.9 102,456 + +1.0 102,458 + -0.6 102,458 + +0.1 102,458 + -0.5 102,458 + +0.4 102,458 + -1.6 102,459 - +0.3 102,459 - +0.1 102,478 + -0.8 102,479 - -0.3 102,479 - +3.9 102,479 - -1.3 102,718 - LRK53_RS18605 0.17 +1.0 102,718 - LRK53_RS18605 0.17 +0.6 102,760 - LRK53_RS18605 0.21 -1.5 102,953 + LRK53_RS18605 0.37 +0.3 102,954 - LRK53_RS18605 0.37 -2.0 103,023 + LRK53_RS18605 0.42 +1.1 103,024 - LRK53_RS18605 0.43 -1.1 103,319 + LRK53_RS18605 0.67 -1.9 103,319 + LRK53_RS18605 0.67 -1.1 103,319 + LRK53_RS18605 0.67 +0.4 103,319 + LRK53_RS18605 0.67 -0.7 103,319 + LRK53_RS18605 0.67 -1.6 103,320 - LRK53_RS18605 0.67 -1.5 103,320 - LRK53_RS18605 0.67 -2.3 103,320 - LRK53_RS18605 0.67 +1.1 103,320 - LRK53_RS18605 0.67 -0.0 103,323 + LRK53_RS18605 0.67 -1.3 103,323 + LRK53_RS18605 0.67 -2.7 103,323 + LRK53_RS18605 0.67 -0.5 103,399 + LRK53_RS18605 0.74 +0.1 103,399 + LRK53_RS18605 0.74 -1.3 103,399 + LRK53_RS18605 0.74 +0.3 103,400 - LRK53_RS18605 0.74 -2.5 103,400 - LRK53_RS18605 0.74 -1.7 103,400 - LRK53_RS18605 0.74 -0.3
Or see this region's nucleotide sequence