Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08035

Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08030 and LRK53_RS08035 are separated by 65 nucleotidesLRK53_RS08035 and LRK53_RS08040 are separated by 37 nucleotides LRK53_RS08030: LRK53_RS08030 - cation diffusion facilitator family transporter, at 1,804,354 to 1,805,256 _RS08030 LRK53_RS08035: LRK53_RS08035 - Slp family lipoprotein, at 1,805,322 to 1,805,840 _RS08035 LRK53_RS08040: LRK53_RS08040 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 1,805,878 to 1,806,792 _RS08040 Position (kb) 1805 1806Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1804.961 kb on + strand, within LRK53_RS08030at 1804.961 kb on + strand, within LRK53_RS08030at 1804.962 kb on - strand, within LRK53_RS08030at 1804.962 kb on - strand, within LRK53_RS08030at 1804.962 kb on - strand, within LRK53_RS08030at 1804.962 kb on - strand, within LRK53_RS08030at 1804.962 kb on - strand, within LRK53_RS08030at 1805.021 kb on + strand, within LRK53_RS08030at 1805.021 kb on + strand, within LRK53_RS08030at 1805.021 kb on + strand, within LRK53_RS08030at 1805.021 kb on + strand, within LRK53_RS08030at 1805.021 kb on + strand, within LRK53_RS08030at 1805.022 kb on - strand, within LRK53_RS08030at 1805.022 kb on - strand, within LRK53_RS08030at 1805.022 kb on - strand, within LRK53_RS08030at 1805.022 kb on - strand, within LRK53_RS08030at 1805.022 kb on - strand, within LRK53_RS08030at 1805.292 kb on - strandat 1805.434 kb on + strand, within LRK53_RS08035at 1805.434 kb on + strand, within LRK53_RS08035at 1805.434 kb on + strand, within LRK53_RS08035at 1805.434 kb on + strand, within LRK53_RS08035at 1805.434 kb on + strand, within LRK53_RS08035at 1805.434 kb on + strand, within LRK53_RS08035at 1805.434 kb on + strand, within LRK53_RS08035at 1805.434 kb on + strand, within LRK53_RS08035at 1805.434 kb on + strand, within LRK53_RS08035at 1805.434 kb on + strand, within LRK53_RS08035at 1805.434 kb on + strand, within LRK53_RS08035at 1805.434 kb on + strand, within LRK53_RS08035at 1805.434 kb on + strand, within LRK53_RS08035at 1805.434 kb on + strand, within LRK53_RS08035at 1805.434 kb on + strand, within LRK53_RS08035at 1805.434 kb on + strand, within LRK53_RS08035at 1805.434 kb on + strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.435 kb on - strand, within LRK53_RS08035at 1805.509 kb on + strand, within LRK53_RS08035at 1805.509 kb on + strand, within LRK53_RS08035at 1805.510 kb on - strand, within LRK53_RS08035at 1805.527 kb on + strand, within LRK53_RS08035at 1805.528 kb on - strand, within LRK53_RS08035at 1805.602 kb on + strand, within LRK53_RS08035at 1805.749 kb on + strand, within LRK53_RS08035at 1805.749 kb on + strand, within LRK53_RS08035at 1805.749 kb on + strand, within LRK53_RS08035at 1805.749 kb on + strand, within LRK53_RS08035at 1805.749 kb on + strand, within LRK53_RS08035at 1805.749 kb on + strand, within LRK53_RS08035at 1805.749 kb on + strand, within LRK53_RS08035at 1805.749 kb on + strand, within LRK53_RS08035at 1805.750 kb on - strand, within LRK53_RS08035at 1805.750 kb on - strand, within LRK53_RS08035at 1805.750 kb on - strand, within LRK53_RS08035at 1805.750 kb on - strand, within LRK53_RS08035at 1805.750 kb on - strand, within LRK53_RS08035at 1805.750 kb on - strand, within LRK53_RS08035at 1805.750 kb on - strand, within LRK53_RS08035at 1805.750 kb on - strand, within LRK53_RS08035at 1805.879 kb on + strandat 1805.880 kb on - strandat 1806.216 kb on - strand, within LRK53_RS08040at 1806.216 kb on - strand, within LRK53_RS08040at 1806.272 kb on + strand, within LRK53_RS08040at 1806.272 kb on + strand, within LRK53_RS08040at 1806.272 kb on + strand, within LRK53_RS08040at 1806.272 kb on + strand, within LRK53_RS08040at 1806.272 kb on + strand, within LRK53_RS08040at 1806.273 kb on - strand, within LRK53_RS08040at 1806.273 kb on - strand, within LRK53_RS08040at 1806.273 kb on - strand, within LRK53_RS08040at 1806.273 kb on - strand, within LRK53_RS08040at 1806.273 kb on - strand, within LRK53_RS08040at 1806.293 kb on + strand, within LRK53_RS08040at 1806.294 kb on - strand, within LRK53_RS08040at 1806.294 kb on - strand, within LRK53_RS08040at 1806.294 kb on - strand, within LRK53_RS08040at 1806.360 kb on - strand, within LRK53_RS08040at 1806.360 kb on - strand, within LRK53_RS08040at 1806.360 kb on - strand, within LRK53_RS08040at 1806.360 kb on - strand, within LRK53_RS08040at 1806.360 kb on - strand, within LRK53_RS08040at 1806.506 kb on + strand, within LRK53_RS08040at 1806.506 kb on + strand, within LRK53_RS08040at 1806.506 kb on + strand, within LRK53_RS08040at 1806.506 kb on + strand, within LRK53_RS08040at 1806.506 kb on + strand, within LRK53_RS08040at 1806.506 kb on + strand, within LRK53_RS08040at 1806.506 kb on + strand, within LRK53_RS08040at 1806.506 kb on + strand, within LRK53_RS08040at 1806.506 kb on + strand, within LRK53_RS08040at 1806.506 kb on + strand, within LRK53_RS08040at 1806.506 kb on + strand, within LRK53_RS08040at 1806.507 kb on - strand, within LRK53_RS08040at 1806.507 kb on - strand, within LRK53_RS08040at 1806.507 kb on - strand, within LRK53_RS08040at 1806.507 kb on - strand, within LRK53_RS08040at 1806.507 kb on - strand, within LRK53_RS08040at 1806.507 kb on - strand, within LRK53_RS08040at 1806.507 kb on - strand, within LRK53_RS08040at 1806.507 kb on - strand, within LRK53_RS08040at 1806.507 kb on - strand, within LRK53_RS08040at 1806.507 kb on - strand, within LRK53_RS08040at 1806.507 kb on - strand, within LRK53_RS08040at 1806.614 kb on + strand, within LRK53_RS08040at 1806.614 kb on + strand, within LRK53_RS08040at 1806.614 kb on + strand, within LRK53_RS08040at 1806.653 kb on + strand, within LRK53_RS08040at 1806.653 kb on + strand, within LRK53_RS08040at 1806.653 kb on + strand, within LRK53_RS08040at 1806.653 kb on + strand, within LRK53_RS08040at 1806.653 kb on + strand, within LRK53_RS08040at 1806.653 kb on + strand, within LRK53_RS08040at 1806.653 kb on + strand, within LRK53_RS08040at 1806.654 kb on - strand, within LRK53_RS08040at 1806.654 kb on - strand, within LRK53_RS08040at 1806.683 kb on + strand, within LRK53_RS08040at 1806.684 kb on - strand, within LRK53_RS08040at 1806.684 kb on - strand, within LRK53_RS08040at 1806.684 kb on - strand, within LRK53_RS08040at 1806.785 kb on + strandat 1806.786 kb on - strandat 1806.786 kb on - strandat 1806.786 kb on - strandat 1806.786 kb on - strandat 1806.820 kb on + strandat 1806.820 kb on + strandat 1806.820 kb on + strandat 1806.820 kb on + strandat 1806.821 kb on - strandat 1806.821 kb on - strandat 1806.821 kb on - strandat 1806.822 kb on + strandat 1806.822 kb on + strandat 1806.822 kb on + strandat 1806.823 kb on - strandat 1806.823 kb on - strandat 1806.823 kb on - strandat 1806.823 kb on - strandat 1806.823 kb on - strandat 1806.823 kb on - strandat 1806.823 kb on - strandat 1806.823 kb on - strandat 1806.823 kb on - strandat 1806.823 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM
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1,804,961 + LRK53_RS08030 0.67 -0.6
1,804,961 + LRK53_RS08030 0.67 -0.5
1,804,962 - LRK53_RS08030 0.67 +0.4
1,804,962 - LRK53_RS08030 0.67 +0.3
1,804,962 - LRK53_RS08030 0.67 -1.6
1,804,962 - LRK53_RS08030 0.67 -0.6
1,804,962 - LRK53_RS08030 0.67 -0.6
1,805,021 + LRK53_RS08030 0.74 +0.8
1,805,021 + LRK53_RS08030 0.74 -1.9
1,805,021 + LRK53_RS08030 0.74 -0.1
1,805,021 + LRK53_RS08030 0.74 -1.2
1,805,021 + LRK53_RS08030 0.74 -1.1
1,805,022 - LRK53_RS08030 0.74 -3.1
1,805,022 - LRK53_RS08030 0.74 -0.6
1,805,022 - LRK53_RS08030 0.74 -0.0
1,805,022 - LRK53_RS08030 0.74 +0.3
1,805,022 - LRK53_RS08030 0.74 +1.9
1,805,292 - -1.4
1,805,434 + LRK53_RS08035 0.22 -0.5
1,805,434 + LRK53_RS08035 0.22 -0.5
1,805,434 + LRK53_RS08035 0.22 -3.3
1,805,434 + LRK53_RS08035 0.22 +0.7
1,805,434 + LRK53_RS08035 0.22 -0.3
1,805,434 + LRK53_RS08035 0.22 +0.3
1,805,434 + LRK53_RS08035 0.22 +0.1
1,805,434 + LRK53_RS08035 0.22 -2.0
1,805,434 + LRK53_RS08035 0.22 -1.5
1,805,434 + LRK53_RS08035 0.22 +2.3
1,805,434 + LRK53_RS08035 0.22 +0.3
1,805,434 + LRK53_RS08035 0.22 +0.3
1,805,434 + LRK53_RS08035 0.22 -0.1
1,805,434 + LRK53_RS08035 0.22 -1.1
1,805,434 + LRK53_RS08035 0.22 +1.0
1,805,434 + LRK53_RS08035 0.22 +0.4
1,805,434 + LRK53_RS08035 0.22 +0.0
1,805,435 - LRK53_RS08035 0.22 -2.6
1,805,435 - LRK53_RS08035 0.22 -0.6
1,805,435 - LRK53_RS08035 0.22 -3.6
1,805,435 - LRK53_RS08035 0.22 -2.2
1,805,435 - LRK53_RS08035 0.22 -2.2
1,805,435 - LRK53_RS08035 0.22 -1.6
1,805,435 - LRK53_RS08035 0.22 +0.8
1,805,435 - LRK53_RS08035 0.22 -1.1
1,805,435 - LRK53_RS08035 0.22 +0.1
1,805,435 - LRK53_RS08035 0.22 -2.9
1,805,435 - LRK53_RS08035 0.22 +0.0
1,805,435 - LRK53_RS08035 0.22 -0.3
1,805,435 - LRK53_RS08035 0.22 -1.3
1,805,435 - LRK53_RS08035 0.22 -1.1
1,805,435 - LRK53_RS08035 0.22 -0.9
1,805,435 - LRK53_RS08035 0.22 -1.5
1,805,435 - LRK53_RS08035 0.22 -1.9
1,805,435 - LRK53_RS08035 0.22 -1.1
1,805,435 - LRK53_RS08035 0.22 -1.5
1,805,435 - LRK53_RS08035 0.22 -0.2
1,805,435 - LRK53_RS08035 0.22 +0.3
1,805,435 - LRK53_RS08035 0.22 -0.3
1,805,435 - LRK53_RS08035 0.22 -1.6
1,805,435 - LRK53_RS08035 0.22 -1.0
1,805,509 + LRK53_RS08035 0.36 -1.5
1,805,509 + LRK53_RS08035 0.36 +0.5
1,805,510 - LRK53_RS08035 0.36 -1.7
1,805,527 + LRK53_RS08035 0.39 -2.8
1,805,528 - LRK53_RS08035 0.40 +1.1
1,805,602 + LRK53_RS08035 0.54 -1.8
1,805,749 + LRK53_RS08035 0.82 -0.3
1,805,749 + LRK53_RS08035 0.82 -1.3
1,805,749 + LRK53_RS08035 0.82 -1.5
1,805,749 + LRK53_RS08035 0.82 +1.4
1,805,749 + LRK53_RS08035 0.82 -1.0
1,805,749 + LRK53_RS08035 0.82 -2.2
1,805,749 + LRK53_RS08035 0.82 -1.6
1,805,749 + LRK53_RS08035 0.82 -1.9
1,805,750 - LRK53_RS08035 0.82 -0.1
1,805,750 - LRK53_RS08035 0.82 -2.2
1,805,750 - LRK53_RS08035 0.82 +1.7
1,805,750 - LRK53_RS08035 0.82 -1.1
1,805,750 - LRK53_RS08035 0.82 +1.7
1,805,750 - LRK53_RS08035 0.82 -2.6
1,805,750 - LRK53_RS08035 0.82 -0.5
1,805,750 - LRK53_RS08035 0.82 -0.4
1,805,879 + -0.8
1,805,880 - -1.4
1,806,216 - LRK53_RS08040 0.37 +1.1
1,806,216 - LRK53_RS08040 0.37 -1.2
1,806,272 + LRK53_RS08040 0.43 -0.5
1,806,272 + LRK53_RS08040 0.43 -1.9
1,806,272 + LRK53_RS08040 0.43 -2.1
1,806,272 + LRK53_RS08040 0.43 -1.5
1,806,272 + LRK53_RS08040 0.43 -1.2
1,806,273 - LRK53_RS08040 0.43 -0.4
1,806,273 - LRK53_RS08040 0.43 -0.9
1,806,273 - LRK53_RS08040 0.43 +2.1
1,806,273 - LRK53_RS08040 0.43 -0.8
1,806,273 - LRK53_RS08040 0.43 -0.6
1,806,293 + LRK53_RS08040 0.45 +0.1
1,806,294 - LRK53_RS08040 0.45 -1.1
1,806,294 - LRK53_RS08040 0.45 -1.1
1,806,294 - LRK53_RS08040 0.45 -0.9
1,806,360 - LRK53_RS08040 0.53 -0.4
1,806,360 - LRK53_RS08040 0.53 +2.1
1,806,360 - LRK53_RS08040 0.53 -0.7
1,806,360 - LRK53_RS08040 0.53 -1.1
1,806,360 - LRK53_RS08040 0.53 +0.4
1,806,506 + LRK53_RS08040 0.69 -1.0
1,806,506 + LRK53_RS08040 0.69 -0.4
1,806,506 + LRK53_RS08040 0.69 +0.1
1,806,506 + LRK53_RS08040 0.69 -1.8
1,806,506 + LRK53_RS08040 0.69 -2.0
1,806,506 + LRK53_RS08040 0.69 +0.5
1,806,506 + LRK53_RS08040 0.69 +0.6
1,806,506 + LRK53_RS08040 0.69 +1.1
1,806,506 + LRK53_RS08040 0.69 -0.6
1,806,506 + LRK53_RS08040 0.69 +0.4
1,806,506 + LRK53_RS08040 0.69 -0.7
1,806,507 - LRK53_RS08040 0.69 -2.2
1,806,507 - LRK53_RS08040 0.69 -0.6
1,806,507 - LRK53_RS08040 0.69 +0.4
1,806,507 - LRK53_RS08040 0.69 -2.3
1,806,507 - LRK53_RS08040 0.69 +0.8
1,806,507 - LRK53_RS08040 0.69 -1.6
1,806,507 - LRK53_RS08040 0.69 -2.1
1,806,507 - LRK53_RS08040 0.69 +1.0
1,806,507 - LRK53_RS08040 0.69 -0.3
1,806,507 - LRK53_RS08040 0.69 -0.2
1,806,507 - LRK53_RS08040 0.69 +2.7
1,806,614 + LRK53_RS08040 0.80 +2.7
1,806,614 + LRK53_RS08040 0.80 -1.9
1,806,614 + LRK53_RS08040 0.80 -0.8
1,806,653 + LRK53_RS08040 0.85 -1.0
1,806,653 + LRK53_RS08040 0.85 -0.7
1,806,653 + LRK53_RS08040 0.85 -2.0
1,806,653 + LRK53_RS08040 0.85 -2.2
1,806,653 + LRK53_RS08040 0.85 +1.9
1,806,653 + LRK53_RS08040 0.85 -2.0
1,806,653 + LRK53_RS08040 0.85 +0.5
1,806,654 - LRK53_RS08040 0.85 -0.7
1,806,654 - LRK53_RS08040 0.85 -1.0
1,806,683 + LRK53_RS08040 0.88 -1.1
1,806,684 - LRK53_RS08040 0.88 -1.9
1,806,684 - LRK53_RS08040 0.88 +0.2
1,806,684 - LRK53_RS08040 0.88 -1.6
1,806,785 + -2.1
1,806,786 - -2.1
1,806,786 - +0.9
1,806,786 - -1.4
1,806,786 - +0.5
1,806,820 + -1.2
1,806,820 + -1.3
1,806,820 + -1.2
1,806,820 + +2.1
1,806,821 - +0.3
1,806,821 - -1.2
1,806,821 - -0.7
1,806,822 + -1.9
1,806,822 + -1.3
1,806,822 + -0.7
1,806,823 - +0.4
1,806,823 - +0.7
1,806,823 - +0.1
1,806,823 - -0.5
1,806,823 - -0.1
1,806,823 - -0.1
1,806,823 - +0.9
1,806,823 - +0.3
1,806,823 - -0.6
1,806,823 - +0.4

Or see this region's nucleotide sequence