Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04059

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
4,559,792	-				-1.5
4,559,799	+				+0.9
4,559,908	+				+1.3
4,559,916	-				-0.4
4,559,916	-				-0.4
4,559,935	-		MIT1002_04058	0.11	+0.1
4,559,955	+		MIT1002_04058	0.15	-0.2
4,559,965	+		MIT1002_04058	0.17	+0.1
4,559,965	+		MIT1002_04058	0.17	-0.1
4,559,978	-		MIT1002_04058	0.19	+1.3
4,559,980	+		MIT1002_04058	0.19	-1.2
4,559,983	-		MIT1002_04058	0.20	+0.6
4,560,019	+		MIT1002_04058	0.26	+0.9
4,560,024	+		MIT1002_04058	0.27	-1.2
4,560,027	-		MIT1002_04058	0.27	-2.8
4,560,049	+		MIT1002_04058	0.31	+0.9
4,560,065	-		MIT1002_04058	0.34	+0.5
4,560,082	+		MIT1002_04058	0.37	+0.4
4,560,171	+		MIT1002_04058	0.52	-1.1
4,560,179	-		MIT1002_04058	0.53	-0.4
4,560,207	+		MIT1002_04058	0.58	-0.3
4,560,207	+		MIT1002_04058	0.58	+0.1
4,560,216	-		MIT1002_04058	0.59	-2.1
4,560,271	+		MIT1002_04058	0.69	+2.9
4,560,316	-		MIT1002_04058	0.77	-0.8
4,560,374	+		MIT1002_04058	0.86	-0.0
4,560,381	+		MIT1002_04058	0.88	-0.6
4,560,389	-		MIT1002_04058	0.89	+0.2
4,560,400	+				+1.3
4,560,455	-				+0.0
4,560,583	-				+0.7
4,560,621	-				+0.7
4,560,653	-				-0.7
4,560,659	-				-1.4
4,560,681	+				+1.7
4,560,735	+				-1.8
4,560,816	+		MIT1002_04059	0.20	-1.5
4,560,816	+		MIT1002_04059	0.20	-0.6
4,560,826	+		MIT1002_04059	0.23	-0.2
4,560,846	-		MIT1002_04059	0.28	+0.3
4,560,960	-		MIT1002_04059	0.55	-0.7
4,560,999	-		MIT1002_04059	0.64	-0.2
4,561,029	+		MIT1002_04059	0.71	-1.4
4,561,065	-		MIT1002_04059	0.80	-0.3
4,561,070	-		MIT1002_04059	0.81	+0.9
4,561,090	+		MIT1002_04059	0.86	-0.3
4,561,165	-				-0.9
4,561,215	+				+0.4
4,561,302	-				-1.7
4,561,361	+				-0.3
4,561,361	-				+0.4
4,561,523	-				-0.1
4,561,529	-				+0.3
4,561,587	-				-1.1
4,561,611	+				-0.9
4,561,652	-				-1.7
4,561,658	+				+1.4
4,561,658	+				-0.7
4,561,658	+				+1.4
4,561,666	-		MIT1002_04060	0.10	-1.4
4,561,666	-		MIT1002_04060	0.10	+0.8
4,561,666	-		MIT1002_04060	0.10	-1.7
4,561,666	-		MIT1002_04060	0.10	-1.0
4,561,666	-		MIT1002_04060	0.10	-0.1
4,561,666	-		MIT1002_04060	0.10	-0.1
4,561,666	-		MIT1002_04060	0.10	+0.6
4,561,688	-		MIT1002_04060	0.12	+0.4
4,561,853	+		MIT1002_04060	0.24	-0.2
4,561,853	+		MIT1002_04060	0.24	-0.1
4,561,853	+		MIT1002_04060	0.24	-1.4
4,561,854	+		MIT1002_04060	0.24	+0.6
4,561,861	-		MIT1002_04060	0.25	+0.8
4,561,899	+		MIT1002_04060	0.27	-0.8
4,561,907	-		MIT1002_04060	0.28	-0.4
4,561,964	+		MIT1002_04060	0.32	+0.3
4,561,964	+		MIT1002_04060	0.32	-3.0
4,561,972	-		MIT1002_04060	0.33	-2.3
4,562,012	+		MIT1002_04060	0.36	+0.9
4,562,035	-		MIT1002_04060	0.37	+1.0
4,562,056	+		MIT1002_04060	0.39	+1.8
4,562,136	+		MIT1002_04060	0.45	-0.4
4,562,136	+		MIT1002_04060	0.45	-0.4