Experiment: monoculture; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03932 and MIT1002_03933 are separated by 147 nucleotides MIT1002_03933 and MIT1002_03934 are separated by 98 nucleotides
MIT1002_03932: MIT1002_03932 - hypothetical protein, at 4,408,050 to 4,409,372
_03932
MIT1002_03933: MIT1002_03933 - TonB-dependent receptor, at 4,409,520 to 4,412,453
_03933
MIT1002_03934: MIT1002_03934 - Pectate trisaccharide-lyase precursor, at 4,412,552 to 4,418,689
_03934
Position (kb) 4409
4410
4411
4412
4413 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4408.561 kb on + strand, within MIT1002_03932 at 4408.561 kb on + strand, within MIT1002_03932 at 4408.569 kb on + strand, within MIT1002_03932 at 4408.577 kb on - strand, within MIT1002_03932 at 4408.601 kb on - strand, within MIT1002_03932 at 4408.621 kb on - strand, within MIT1002_03932 at 4408.621 kb on - strand, within MIT1002_03932 at 4408.696 kb on + strand, within MIT1002_03932 at 4408.709 kb on + strand, within MIT1002_03932 at 4408.717 kb on - strand, within MIT1002_03932 at 4408.717 kb on - strand, within MIT1002_03932 at 4408.733 kb on + strand, within MIT1002_03932 at 4408.738 kb on + strand, within MIT1002_03932 at 4408.738 kb on + strand, within MIT1002_03932 at 4408.927 kb on - strand, within MIT1002_03932 at 4408.949 kb on - strand, within MIT1002_03932 at 4408.994 kb on - strand, within MIT1002_03932 at 4409.043 kb on + strand, within MIT1002_03932 at 4409.093 kb on + strand, within MIT1002_03932 at 4409.098 kb on + strand, within MIT1002_03932 at 4409.122 kb on + strand, within MIT1002_03932 at 4409.146 kb on + strand, within MIT1002_03932 at 4409.166 kb on + strand, within MIT1002_03932 at 4409.172 kb on + strand, within MIT1002_03932 at 4409.172 kb on + strand, within MIT1002_03932 at 4409.172 kb on + strand, within MIT1002_03932 at 4409.172 kb on + strand, within MIT1002_03932 at 4409.172 kb on + strand, within MIT1002_03932 at 4409.172 kb on + strand, within MIT1002_03932 at 4409.172 kb on + strand, within MIT1002_03932 at 4409.172 kb on + strand, within MIT1002_03932 at 4409.174 kb on - strand, within MIT1002_03932 at 4409.174 kb on - strand, within MIT1002_03932 at 4409.180 kb on - strand, within MIT1002_03932 at 4409.180 kb on - strand, within MIT1002_03932 at 4409.180 kb on - strand, within MIT1002_03932 at 4409.180 kb on - strand, within MIT1002_03932 at 4409.190 kb on - strand, within MIT1002_03932 at 4409.190 kb on - strand, within MIT1002_03932 at 4409.200 kb on - strand, within MIT1002_03932 at 4409.285 kb on - strand at 4409.365 kb on - strand at 4409.608 kb on - strand at 4409.665 kb on + strand at 4409.665 kb on + strand at 4409.665 kb on + strand at 4409.688 kb on - strand at 4409.762 kb on + strand at 4409.780 kb on - strand at 4409.797 kb on + strand at 4409.797 kb on + strand at 4409.839 kb on - strand, within MIT1002_03933 at 4409.901 kb on - strand, within MIT1002_03933 at 4409.922 kb on + strand, within MIT1002_03933 at 4409.938 kb on + strand, within MIT1002_03933 at 4409.981 kb on - strand, within MIT1002_03933 at 4410.023 kb on - strand, within MIT1002_03933 at 4410.146 kb on + strand, within MIT1002_03933 at 4410.176 kb on + strand, within MIT1002_03933 at 4410.239 kb on + strand, within MIT1002_03933 at 4410.265 kb on - strand, within MIT1002_03933 at 4410.292 kb on - strand, within MIT1002_03933 at 4410.357 kb on + strand, within MIT1002_03933 at 4410.357 kb on + strand, within MIT1002_03933 at 4410.357 kb on + strand, within MIT1002_03933 at 4410.365 kb on - strand, within MIT1002_03933 at 4410.666 kb on + strand, within MIT1002_03933 at 4410.682 kb on - strand, within MIT1002_03933 at 4410.689 kb on - strand, within MIT1002_03933 at 4410.770 kb on + strand, within MIT1002_03933 at 4410.799 kb on + strand, within MIT1002_03933 at 4410.800 kb on - strand, within MIT1002_03933 at 4410.800 kb on - strand, within MIT1002_03933 at 4410.800 kb on - strand, within MIT1002_03933 at 4410.800 kb on - strand, within MIT1002_03933 at 4410.800 kb on - strand, within MIT1002_03933 at 4410.800 kb on - strand, within MIT1002_03933 at 4410.833 kb on + strand, within MIT1002_03933 at 4410.854 kb on - strand, within MIT1002_03933 at 4410.855 kb on - strand, within MIT1002_03933 at 4410.855 kb on - strand, within MIT1002_03933 at 4410.911 kb on + strand, within MIT1002_03933 at 4410.911 kb on + strand, within MIT1002_03933 at 4410.958 kb on + strand, within MIT1002_03933 at 4410.958 kb on + strand, within MIT1002_03933 at 4410.981 kb on + strand, within MIT1002_03933 at 4411.025 kb on - strand, within MIT1002_03933 at 4411.081 kb on + strand, within MIT1002_03933 at 4411.089 kb on - strand, within MIT1002_03933 at 4411.089 kb on - strand, within MIT1002_03933 at 4411.197 kb on - strand, within MIT1002_03933 at 4411.210 kb on + strand, within MIT1002_03933 at 4411.229 kb on + strand, within MIT1002_03933 at 4411.237 kb on - strand, within MIT1002_03933 at 4411.269 kb on + strand, within MIT1002_03933 at 4411.429 kb on - strand, within MIT1002_03933 at 4411.454 kb on - strand, within MIT1002_03933 at 4411.478 kb on + strand, within MIT1002_03933 at 4411.512 kb on - strand, within MIT1002_03933 at 4411.524 kb on - strand, within MIT1002_03933 at 4411.593 kb on - strand, within MIT1002_03933 at 4411.633 kb on - strand, within MIT1002_03933 at 4411.667 kb on + strand, within MIT1002_03933 at 4411.694 kb on + strand, within MIT1002_03933 at 4411.700 kb on + strand, within MIT1002_03933 at 4411.700 kb on + strand, within MIT1002_03933 at 4411.700 kb on + strand, within MIT1002_03933 at 4411.702 kb on - strand, within MIT1002_03933 at 4411.707 kb on - strand, within MIT1002_03933 at 4411.707 kb on - strand, within MIT1002_03933 at 4411.708 kb on - strand, within MIT1002_03933 at 4411.708 kb on - strand, within MIT1002_03933 at 4411.708 kb on - strand, within MIT1002_03933 at 4411.902 kb on + strand, within MIT1002_03933 at 4411.903 kb on + strand, within MIT1002_03933 at 4411.903 kb on + strand, within MIT1002_03933 at 4411.903 kb on + strand, within MIT1002_03933 at 4411.911 kb on - strand, within MIT1002_03933 at 4411.968 kb on - strand, within MIT1002_03933 at 4412.003 kb on - strand, within MIT1002_03933 at 4412.022 kb on + strand, within MIT1002_03933 at 4412.053 kb on + strand, within MIT1002_03933 at 4412.068 kb on + strand, within MIT1002_03933 at 4412.068 kb on + strand, within MIT1002_03933 at 4412.068 kb on + strand, within MIT1002_03933 at 4412.068 kb on + strand, within MIT1002_03933 at 4412.076 kb on + strand, within MIT1002_03933 at 4412.076 kb on - strand, within MIT1002_03933 at 4412.223 kb on - strand at 4412.280 kb on - strand at 4412.290 kb on + strand at 4412.298 kb on - strand at 4412.298 kb on - strand at 4412.331 kb on - strand at 4412.341 kb on + strand at 4412.349 kb on - strand at 4412.370 kb on + strand at 4412.411 kb on - strand at 4412.427 kb on - strand at 4412.473 kb on - strand at 4412.628 kb on + strand at 4412.628 kb on + strand at 4412.628 kb on + strand at 4412.636 kb on - strand at 4412.646 kb on + strand at 4412.646 kb on + strand at 4412.654 kb on - strand at 4412.654 kb on - strand at 4412.749 kb on - strand at 4412.760 kb on - strand at 4412.760 kb on - strand at 4412.778 kb on + strand at 4412.783 kb on + strand at 4412.828 kb on + strand at 4412.829 kb on + strand at 4412.829 kb on + strand at 4412.839 kb on + strand at 4412.844 kb on + strand at 4412.856 kb on + strand at 4412.878 kb on - strand at 4412.928 kb on - strand at 4412.989 kb on - strand at 4413.033 kb on + strand at 4413.033 kb on + strand at 4413.033 kb on + strand at 4413.033 kb on + strand at 4413.040 kb on + strand at 4413.041 kb on - strand at 4413.041 kb on - strand at 4413.064 kb on + strand at 4413.069 kb on + strand at 4413.069 kb on + strand at 4413.069 kb on + strand at 4413.097 kb on - strand at 4413.153 kb on + strand at 4413.161 kb on - strand at 4413.161 kb on - strand at 4413.161 kb on - strand at 4413.197 kb on - strand, within MIT1002_03934 at 4413.212 kb on - strand, within MIT1002_03934 at 4413.232 kb on - strand, within MIT1002_03934 at 4413.340 kb on - strand, within MIT1002_03934 at 4413.356 kb on - strand, within MIT1002_03934 at 4413.372 kb on - strand, within MIT1002_03934 at 4413.400 kb on - strand, within MIT1002_03934 at 4413.401 kb on + strand, within MIT1002_03934 at 4413.401 kb on + strand, within MIT1002_03934 at 4413.401 kb on + strand, within MIT1002_03934 at 4413.408 kb on - strand, within MIT1002_03934 at 4413.412 kb on + strand, within MIT1002_03934 at 4413.441 kb on - strand, within MIT1002_03934
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 3 remove 4,408,561 + MIT1002_03932 0.39 +0.6 4,408,561 + MIT1002_03932 0.39 -0.3 4,408,569 + MIT1002_03932 0.39 -2.3 4,408,577 - MIT1002_03932 0.40 +0.6 4,408,601 - MIT1002_03932 0.42 -0.4 4,408,621 - MIT1002_03932 0.43 +0.5 4,408,621 - MIT1002_03932 0.43 +0.3 4,408,696 + MIT1002_03932 0.49 +0.9 4,408,709 + MIT1002_03932 0.50 +0.1 4,408,717 - MIT1002_03932 0.50 +0.7 4,408,717 - MIT1002_03932 0.50 -0.8 4,408,733 + MIT1002_03932 0.52 +0.1 4,408,738 + MIT1002_03932 0.52 -0.4 4,408,738 + MIT1002_03932 0.52 -1.6 4,408,927 - MIT1002_03932 0.66 -0.9 4,408,949 - MIT1002_03932 0.68 -0.7 4,408,994 - MIT1002_03932 0.71 -0.4 4,409,043 + MIT1002_03932 0.75 -3.2 4,409,093 + MIT1002_03932 0.79 +0.1 4,409,098 + MIT1002_03932 0.79 +1.4 4,409,122 + MIT1002_03932 0.81 +0.4 4,409,146 + MIT1002_03932 0.83 +0.4 4,409,166 + MIT1002_03932 0.84 +0.9 4,409,172 + MIT1002_03932 0.85 -0.3 4,409,172 + MIT1002_03932 0.85 -0.1 4,409,172 + MIT1002_03932 0.85 +0.6 4,409,172 + MIT1002_03932 0.85 +1.1 4,409,172 + MIT1002_03932 0.85 +0.1 4,409,172 + MIT1002_03932 0.85 +1.5 4,409,172 + MIT1002_03932 0.85 +2.0 4,409,172 + MIT1002_03932 0.85 -0.2 4,409,174 - MIT1002_03932 0.85 -0.9 4,409,174 - MIT1002_03932 0.85 -0.1 4,409,180 - MIT1002_03932 0.85 -0.3 4,409,180 - MIT1002_03932 0.85 -0.9 4,409,180 - MIT1002_03932 0.85 +0.5 4,409,180 - MIT1002_03932 0.85 -0.7 4,409,190 - MIT1002_03932 0.86 -0.4 4,409,190 - MIT1002_03932 0.86 -0.3 4,409,200 - MIT1002_03932 0.87 +0.3 4,409,285 - -0.4 4,409,365 - +0.0 4,409,608 - +1.0 4,409,665 + -0.6 4,409,665 + +0.1 4,409,665 + +0.0 4,409,688 - -1.1 4,409,762 + +1.1 4,409,780 - +1.0 4,409,797 + -0.1 4,409,797 + +1.6 4,409,839 - MIT1002_03933 0.11 +0.3 4,409,901 - MIT1002_03933 0.13 -0.4 4,409,922 + MIT1002_03933 0.14 +1.0 4,409,938 + MIT1002_03933 0.14 +1.0 4,409,981 - MIT1002_03933 0.16 +0.6 4,410,023 - MIT1002_03933 0.17 +1.1 4,410,146 + MIT1002_03933 0.21 +0.8 4,410,176 + MIT1002_03933 0.22 -0.8 4,410,239 + MIT1002_03933 0.25 +0.6 4,410,265 - MIT1002_03933 0.25 +0.2 4,410,292 - MIT1002_03933 0.26 +0.9 4,410,357 + MIT1002_03933 0.29 +2.1 4,410,357 + MIT1002_03933 0.29 +0.5 4,410,357 + MIT1002_03933 0.29 +1.3 4,410,365 - MIT1002_03933 0.29 +0.4 4,410,666 + MIT1002_03933 0.39 -0.7 4,410,682 - MIT1002_03933 0.40 -0.5 4,410,689 - MIT1002_03933 0.40 -1.7 4,410,770 + MIT1002_03933 0.43 +0.8 4,410,799 + MIT1002_03933 0.44 +0.3 4,410,800 - MIT1002_03933 0.44 -0.8 4,410,800 - MIT1002_03933 0.44 +0.4 4,410,800 - MIT1002_03933 0.44 -0.2 4,410,800 - MIT1002_03933 0.44 +0.9 4,410,800 - MIT1002_03933 0.44 +0.5 4,410,800 - MIT1002_03933 0.44 -1.5 4,410,833 + MIT1002_03933 0.45 +1.1 4,410,854 - MIT1002_03933 0.45 -0.8 4,410,855 - MIT1002_03933 0.46 -0.3 4,410,855 - MIT1002_03933 0.46 -0.3 4,410,911 + MIT1002_03933 0.47 +0.3 4,410,911 + MIT1002_03933 0.47 +0.6 4,410,958 + MIT1002_03933 0.49 +1.5 4,410,958 + MIT1002_03933 0.49 -0.9 4,410,981 + MIT1002_03933 0.50 -0.3 4,411,025 - MIT1002_03933 0.51 -0.5 4,411,081 + MIT1002_03933 0.53 -2.6 4,411,089 - MIT1002_03933 0.53 -0.4 4,411,089 - MIT1002_03933 0.53 -0.4 4,411,197 - MIT1002_03933 0.57 -0.5 4,411,210 + MIT1002_03933 0.58 +2.6 4,411,229 + MIT1002_03933 0.58 -0.1 4,411,237 - MIT1002_03933 0.59 +1.1 4,411,269 + MIT1002_03933 0.60 +0.3 4,411,429 - MIT1002_03933 0.65 -0.5 4,411,454 - MIT1002_03933 0.66 +0.2 4,411,478 + MIT1002_03933 0.67 -0.3 4,411,512 - MIT1002_03933 0.68 +0.3 4,411,524 - MIT1002_03933 0.68 +3.1 4,411,593 - MIT1002_03933 0.71 +0.6 4,411,633 - MIT1002_03933 0.72 +0.7 4,411,667 + MIT1002_03933 0.73 -0.0 4,411,694 + MIT1002_03933 0.74 -1.1 4,411,700 + MIT1002_03933 0.74 -0.8 4,411,700 + MIT1002_03933 0.74 -0.1 4,411,700 + MIT1002_03933 0.74 -0.3 4,411,702 - MIT1002_03933 0.74 +0.7 4,411,707 - MIT1002_03933 0.75 +0.2 4,411,707 - MIT1002_03933 0.75 +0.9 4,411,708 - MIT1002_03933 0.75 -1.4 4,411,708 - MIT1002_03933 0.75 -0.8 4,411,708 - MIT1002_03933 0.75 -0.8 4,411,902 + MIT1002_03933 0.81 -0.2 4,411,903 + MIT1002_03933 0.81 -0.4 4,411,903 + MIT1002_03933 0.81 -0.5 4,411,903 + MIT1002_03933 0.81 +1.5 4,411,911 - MIT1002_03933 0.81 -0.5 4,411,968 - MIT1002_03933 0.83 -2.7 4,412,003 - MIT1002_03933 0.85 +1.7 4,412,022 + MIT1002_03933 0.85 -1.3 4,412,053 + MIT1002_03933 0.86 -0.9 4,412,068 + MIT1002_03933 0.87 +0.4 4,412,068 + MIT1002_03933 0.87 +0.0 4,412,068 + MIT1002_03933 0.87 -0.3 4,412,068 + MIT1002_03933 0.87 -1.7 4,412,076 + MIT1002_03933 0.87 -1.7 4,412,076 - MIT1002_03933 0.87 +0.6 4,412,223 - +0.5 4,412,280 - +0.1 4,412,290 + -1.2 4,412,298 - +0.3 4,412,298 - +1.2 4,412,331 - -0.1 4,412,341 + +0.6 4,412,349 - -0.1 4,412,370 + -0.7 4,412,411 - -0.9 4,412,427 - -1.3 4,412,473 - +0.3 4,412,628 + -2.1 4,412,628 + +0.4 4,412,628 + +0.6 4,412,636 - +0.4 4,412,646 + -1.2 4,412,646 + +1.1 4,412,654 - -0.0 4,412,654 - +1.9 4,412,749 - -2.5 4,412,760 - +0.1 4,412,760 - +1.3 4,412,778 + +0.4 4,412,783 + +0.2 4,412,828 + -1.2 4,412,829 + -0.0 4,412,829 + -3.2 4,412,839 + +0.3 4,412,844 + +0.3 4,412,856 + +1.3 4,412,878 - -0.3 4,412,928 - -0.1 4,412,989 - -2.7 4,413,033 + +1.8 4,413,033 + -0.6 4,413,033 + +2.1 4,413,033 + -0.3 4,413,040 + -1.3 4,413,041 - +0.4 4,413,041 - -0.7 4,413,064 + -0.6 4,413,069 + -0.7 4,413,069 + -0.4 4,413,069 + -1.5 4,413,097 - +0.6 4,413,153 + -0.1 4,413,161 - -1.4 4,413,161 - -0.3 4,413,161 - +0.6 4,413,197 - MIT1002_03934 0.11 -0.1 4,413,212 - MIT1002_03934 0.11 +0.3 4,413,232 - MIT1002_03934 0.11 +1.6 4,413,340 - MIT1002_03934 0.13 +0.2 4,413,356 - MIT1002_03934 0.13 -0.7 4,413,372 - MIT1002_03934 0.13 -0.2 4,413,400 - MIT1002_03934 0.14 -0.7 4,413,401 + MIT1002_03934 0.14 +0.2 4,413,401 + MIT1002_03934 0.14 +0.3 4,413,401 + MIT1002_03934 0.14 +0.3 4,413,408 - MIT1002_03934 0.14 +0.9 4,413,412 + MIT1002_03934 0.14 +0.4 4,413,441 - MIT1002_03934 0.14 +0.9
Or see this region's nucleotide sequence