Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03906

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
4,376,910	-		MIT1002_03905	0.60	+1.2
4,376,910	-		MIT1002_03905	0.60	-0.7
4,376,955	+		MIT1002_03905	0.62	-1.0
4,376,972	+		MIT1002_03905	0.63	-0.7
4,376,972	+		MIT1002_03905	0.63	-0.4
4,376,972	+		MIT1002_03905	0.63	-1.8
4,376,972	+		MIT1002_03905	0.63	-0.5
4,376,972	+		MIT1002_03905	0.63	+0.3
4,376,987	-		MIT1002_03905	0.64	-1.1
4,377,121	+		MIT1002_03905	0.71	+1.6
4,377,187	+		MIT1002_03905	0.74	+0.6
4,377,187	+		MIT1002_03905	0.74	+0.1
4,377,190	-		MIT1002_03905	0.75	-1.3
4,377,205	-		MIT1002_03905	0.75	-0.7
4,377,249	+		MIT1002_03905	0.78	-1.5
4,377,272	+		MIT1002_03905	0.79	+0.3
4,377,302	+		MIT1002_03905	0.80	+0.2
4,377,323	-		MIT1002_03905	0.82	-3.6
4,377,381	+		MIT1002_03905	0.85	-1.3
4,377,393	+		MIT1002_03905	0.85	-0.8
4,377,401	-		MIT1002_03905	0.86	-2.0
4,377,426	+		MIT1002_03905	0.87	-0.5
4,377,437	-		MIT1002_03905	0.88	-0.5
4,377,449	-		MIT1002_03905	0.88	+1.3
4,377,559	-				-0.8
4,377,634	+				+0.1
4,377,642	-				-2.4
4,377,668	-				-1.7
4,377,702	+				+0.9
4,377,702	+				-1.0
4,377,702	+				-0.3
4,377,702	+				-0.8
4,377,705	-				-1.4
4,377,710	-				+0.1
4,377,738	+				+0.1
4,377,746	-				-0.3
4,377,752	+				-0.7
4,377,752	+				-0.3
4,377,752	+				+0.3
4,377,760	-				+1.0
4,377,912	-		MIT1002_03906	0.19	+0.9
4,378,011	+		MIT1002_03906	0.42	-1.1
4,378,014	-		MIT1002_03906	0.43	-1.7
4,378,019	+		MIT1002_03906	0.44	+0.1
4,378,112	+		MIT1002_03906	0.66	-1.6
4,378,253	+				+0.9
4,378,253	-				+0.1
4,378,267	+				+0.4
4,378,307	+				-0.5
4,378,344	-				+1.0
4,378,357	-				-0.1
4,378,377	-				-1.4
4,378,377	-				+1.0
4,378,438	+				-0.5
4,378,438	+				-1.0
4,378,438	+				+0.5
4,378,438	+				-1.1
4,378,446	-				-0.8
4,378,446	-				-0.8
4,378,446	-				+0.4
4,378,487	+				-3.2
4,378,492	+				-1.8
4,378,492	+				-3.3
4,378,492	+				-1.3
4,378,492	+				+0.6
4,378,500	-				-1.9
4,378,500	-				-0.8
4,378,602	-		MIT1002_03907	0.12	-1.1
4,378,620	+		MIT1002_03907	0.13	-1.6
4,378,639	-		MIT1002_03907	0.14	-1.8
4,378,658	+		MIT1002_03907	0.16	-2.7
4,378,660	-		MIT1002_03907	0.16	-3.2
4,378,660	-		MIT1002_03907	0.16	-1.1
4,378,662	-		MIT1002_03907	0.16	-0.7
4,378,703	+		MIT1002_03907	0.19	-1.1
4,378,710	+		MIT1002_03907	0.19	-1.8
4,378,710	+		MIT1002_03907	0.19	-1.8
4,378,718	-		MIT1002_03907	0.20	-0.5
4,378,718	-		MIT1002_03907	0.20	-0.9
4,378,718	-		MIT1002_03907	0.20	-1.7
4,378,718	-		MIT1002_03907	0.20	-0.7
4,378,800	-		MIT1002_03907	0.26	+1.4
4,378,802	-		MIT1002_03907	0.26	-2.0
4,378,908	+		MIT1002_03907	0.34	-0.7
4,378,914	-		MIT1002_03907	0.34	-1.8
4,378,914	-		MIT1002_03907	0.34	-1.6
4,378,998	-		MIT1002_03907	0.40	-2.3
4,379,041	+		MIT1002_03907	0.43	-2.2
4,379,041	+		MIT1002_03907	0.43	-1.7
4,379,041	+		MIT1002_03907	0.43	-1.9
4,379,041	+		MIT1002_03907	0.43	-1.7
4,379,041	+		MIT1002_03907	0.43	-3.5
4,379,041	+		MIT1002_03907	0.43	-3.0
4,379,048	+		MIT1002_03907	0.44	-1.8
4,379,049	-		MIT1002_03907	0.44	-1.8
4,379,049	-		MIT1002_03907	0.44	-2.0
4,379,120	-		MIT1002_03907	0.49	+0.7
4,379,175	-		MIT1002_03907	0.53	-2.8
4,379,210	-		MIT1002_03907	0.55	+0.9
4,379,226	+		MIT1002_03907	0.57	+1.3
4,379,226	+		MIT1002_03907	0.57	-4.1