Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03900

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
4,369,764	+				+0.3
4,369,855	+				-0.3
4,369,862	-				-0.0
4,369,896	+				-3.5
4,369,915	-				+1.3
4,369,917	+				-0.3
4,369,926	-				-1.7
4,369,974	+				-0.9
4,370,036	-				+1.1
4,370,270	-		MIT1002_03900	0.25	-0.8
4,370,313	+		MIT1002_03900	0.28	-1.0
4,370,409	+		MIT1002_03900	0.35	-2.3
4,370,436	+		MIT1002_03900	0.37	-0.9
4,370,447	+		MIT1002_03900	0.38	-1.5
4,370,503	+		MIT1002_03900	0.42	-0.1
4,370,505	-		MIT1002_03900	0.42	-0.9
4,370,516	-		MIT1002_03900	0.43	+0.1
4,370,516	-		MIT1002_03900	0.43	+0.0
4,370,518	+		MIT1002_03900	0.43	-0.3
4,370,547	+		MIT1002_03900	0.45	+0.1
4,370,648	-		MIT1002_03900	0.52	-0.8
4,370,720	-		MIT1002_03900	0.57	-0.8
4,370,728	-		MIT1002_03900	0.58	-2.0
4,370,756	-		MIT1002_03900	0.59	+0.0
4,370,758	-		MIT1002_03900	0.60	+0.1
4,370,802	-		MIT1002_03900	0.63	-0.8
4,370,931	-		MIT1002_03900	0.72	+1.1
4,370,952	+		MIT1002_03900	0.73	-2.1
4,370,999	+		MIT1002_03900	0.77	-3.1
4,371,068	+		MIT1002_03900	0.81	+2.3
4,371,068	+		MIT1002_03900	0.81	-2.4
4,371,068	+		MIT1002_03900	0.81	+0.9
4,371,068	+		MIT1002_03900	0.81	-0.7
4,371,181	-		MIT1002_03900	0.89	-0.8
4,371,183	+		MIT1002_03900	0.90	+0.7
4,371,193	+				-2.0
4,371,193	+				-1.1
4,371,193	+				+0.1
4,371,201	-				+0.1
4,371,201	-				-0.9
4,371,217	+				+0.6
4,371,217	+				+1.5
4,371,217	+				-2.1
4,371,217	+				-0.2
4,371,217	+				+0.1
4,371,225	-				-0.3
4,371,225	-				-1.8
4,371,225	-				-1.4
4,371,356	+				-0.8
4,371,356	+				-0.0
4,371,356	+				+0.9
4,371,356	+				-4.4
4,371,356	+				-0.1
4,371,356	+				-0.1
4,371,364	-				-1.1
4,371,364	-				+1.6
4,371,365	-				+0.3
4,371,387	+				-0.3
4,371,402	-				-1.4
4,371,436	+				-1.3
4,371,463	+		MIT1002_03901	0.13	-0.8
4,371,466	-		MIT1002_03901	0.13	-0.7
4,371,471	-		MIT1002_03901	0.14	+1.2
4,371,474	-		MIT1002_03901	0.14	-0.1
4,371,500	+		MIT1002_03901	0.17	+0.1
4,371,513	-		MIT1002_03901	0.19	+0.6
4,371,525	-		MIT1002_03901	0.20	+0.8
4,371,612	+		MIT1002_03901	0.30	+0.6
4,371,673	+		MIT1002_03901	0.37	+0.3
4,371,708	+		MIT1002_03901	0.41	-0.0
4,371,708	+		MIT1002_03901	0.41	+1.1
4,371,716	-		MIT1002_03901	0.41	+0.6
4,371,716	-		MIT1002_03901	0.41	+2.9
4,371,756	+		MIT1002_03901	0.46	+0.6
4,371,756	+		MIT1002_03901	0.46	-0.3
4,371,756	+		MIT1002_03901	0.46	+0.5
4,371,759	-		MIT1002_03901	0.46	+0.6
4,371,877	-		MIT1002_03901	0.60	-1.1
4,371,922	+		MIT1002_03901	0.65	+0.1
4,371,925	+		MIT1002_03901	0.65	-0.7
4,372,191	-				+1.5
4,372,281	-				-0.8
4,372,282	+				-1.3
4,372,283	+				+0.1
4,372,329	+		MIT1002_03902	0.11	+1.3