Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03890

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
4,354,888	+				+0.5
4,354,915	-		MIT1002_03889	0.10	+1.6
4,354,963	+		MIT1002_03889	0.16	+1.0
4,354,971	-		MIT1002_03889	0.17	+0.3
4,354,971	-		MIT1002_03889	0.17	-0.6
4,355,003	+		MIT1002_03889	0.20	+0.0
4,355,011	-		MIT1002_03889	0.21	-0.3
4,355,011	-		MIT1002_03889	0.21	-0.3
4,355,144	+		MIT1002_03889	0.36	+0.7
4,355,228	+		MIT1002_03889	0.46	-3.1
4,355,256	-		MIT1002_03889	0.49	-0.8
4,355,273	-		MIT1002_03889	0.51	+0.1
4,355,315	-		MIT1002_03889	0.55	-0.1
4,355,487	+		MIT1002_03889	0.75	+0.7
4,355,490	-		MIT1002_03889	0.75	-0.8
4,355,505	-		MIT1002_03889	0.77	+1.3
4,355,516	-		MIT1002_03889	0.78	+0.0
4,355,542	+		MIT1002_03889	0.81	+0.2
4,355,585	+		MIT1002_03889	0.86	+1.3
4,355,585	+		MIT1002_03889	0.86	+0.4
4,355,593	-		MIT1002_03889	0.87	-1.7
4,355,593	-		MIT1002_03889	0.87	+0.9
4,355,593	-		MIT1002_03889	0.87	-0.5
4,355,603	-		MIT1002_03889	0.88	-0.5
4,355,651	-				-1.0
4,355,730	-				+0.9
4,355,754	+				-0.8
4,355,766	-				+0.8
4,355,774	-				+0.3
4,355,776	-				+1.0
4,355,790	-				+0.1
4,355,851	+				+2.6
4,355,869	-				-1.4
4,355,910	+				-1.4
4,355,918	-				+0.5
4,355,918	-				+1.1
4,355,955	-				+0.6
4,355,972	-		MIT1002_03890	0.10	+1.2
4,356,020	+		MIT1002_03890	0.14	+0.1
4,356,020	+		MIT1002_03890	0.14	-1.1
4,356,056	+		MIT1002_03890	0.16	-0.1
4,356,110	-		MIT1002_03890	0.20	-0.0
4,356,162	+		MIT1002_03890	0.24	-1.3
4,356,162	+		MIT1002_03890	0.24	-1.3
4,356,229	+		MIT1002_03890	0.29	+0.2
4,356,238	-		MIT1002_03890	0.30	-2.8
4,356,292	-		MIT1002_03890	0.34	-1.1
4,356,345	-		MIT1002_03890	0.37	-1.2
4,356,345	-		MIT1002_03890	0.37	+0.8
4,356,360	+		MIT1002_03890	0.39	+0.7
4,356,387	-		MIT1002_03890	0.41	-0.7
4,356,441	-		MIT1002_03890	0.45	+0.5
4,356,482	-		MIT1002_03890	0.48	+1.0
4,356,484	+		MIT1002_03890	0.48	+0.2
4,356,523	-		MIT1002_03890	0.51	-0.4
4,356,542	+		MIT1002_03890	0.52	+0.5
4,356,552	+		MIT1002_03890	0.53	-0.6
4,356,552	+		MIT1002_03890	0.53	-1.2
4,356,586	+		MIT1002_03890	0.55	-0.7
4,356,594	-		MIT1002_03890	0.56	+0.5
4,356,594	-		MIT1002_03890	0.56	+0.1
4,356,608	-		MIT1002_03890	0.57	+0.0
4,356,668	+		MIT1002_03890	0.61	-0.3
4,356,668	+		MIT1002_03890	0.61	-0.5
4,356,705	+		MIT1002_03890	0.64	+0.7
4,356,705	+		MIT1002_03890	0.64	+1.2
4,356,712	-		MIT1002_03890	0.64	-0.3
4,356,713	-		MIT1002_03890	0.65	-0.3
4,356,791	+		MIT1002_03890	0.70	-1.0
4,356,801	+		MIT1002_03890	0.71	-0.0
4,356,801	+		MIT1002_03890	0.71	-0.1
4,356,827	-		MIT1002_03890	0.73	-0.6
4,356,877	+		MIT1002_03890	0.77	+0.2
4,356,885	-		MIT1002_03890	0.77	-1.3
4,356,893	+		MIT1002_03890	0.78	+0.6
4,357,075	-				+0.9
4,357,077	+				-0.3
4,357,078	+				-0.3
4,357,086	-				+0.6
4,357,086	-				+0.1
4,357,096	+				-0.9
4,357,133	-				-0.6
4,357,453	+				+0.5
4,357,461	-				+0.9
4,357,461	-				-1.0
4,357,473	+				+0.0
4,357,473	-				+0.2
4,357,491	+				+1.1
4,357,491	+				-0.3
4,357,491	+				+0.9
4,357,491	+				+0.1
4,357,491	+				-0.6
4,357,491	+				-0.8
4,357,491	+				-1.5
4,357,491	+				-0.6
4,357,491	+				+0.0
4,357,491	+				+0.2
4,357,491	+				-0.1
4,357,491	+				-0.3
4,357,499	-				-1.3
4,357,499	-				-1.0
4,357,499	-				+1.5
4,357,499	-				+0.7
4,357,499	-				-0.1
4,357,499	-				-0.6
4,357,499	-				+2.7
4,357,499	-				+1.7
4,357,501	+				+0.1
4,357,509	-				+0.4
4,357,563	-				-1.3
4,357,578	-				-1.2
4,357,580	-				+0.4
4,357,580	-				-0.6
4,357,676	+				+1.6
4,357,677	+				+0.2
4,357,725	-		MIT1002_03891	0.14	-0.7
4,357,726	-		MIT1002_03891	0.14	-2.2
4,357,763	+		MIT1002_03891	0.18	-1.0
4,357,772	+		MIT1002_03891	0.19	-0.9
4,357,912	-		MIT1002_03891	0.33	-0.4
4,357,976	-		MIT1002_03891	0.39	-1.4
4,357,993	-		MIT1002_03891	0.41	+0.5
4,358,060	+		MIT1002_03891	0.48	+0.5
4,358,116	-		MIT1002_03891	0.53	-0.2
4,358,183	-		MIT1002_03891	0.60	+0.6