Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03879

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
4,344,439	+				+0.8
4,344,553	+				-0.3
4,344,623	-		MIT1002_03878	0.15	+0.6
4,344,718	+		MIT1002_03878	0.26	-0.9
4,344,718	+		MIT1002_03878	0.26	+1.5
4,344,727	-		MIT1002_03878	0.27	+0.3
4,344,729	-		MIT1002_03878	0.27	+1.1
4,344,731	-		MIT1002_03878	0.27	+0.6
4,344,742	-		MIT1002_03878	0.28	-0.8
4,344,878	-		MIT1002_03878	0.43	-0.2
4,344,946	+		MIT1002_03878	0.50	+0.9
4,344,946	+		MIT1002_03878	0.50	-0.4
4,344,952	+		MIT1002_03878	0.51	-0.1
4,344,954	-		MIT1002_03878	0.51	+0.1
4,345,003	+		MIT1002_03878	0.56	-1.0
4,345,032	-		MIT1002_03878	0.59	-0.7
4,345,078	+		MIT1002_03878	0.64	-0.0
4,345,098	-		MIT1002_03878	0.67	+1.0
4,345,145	-		MIT1002_03878	0.72	-1.3
4,345,161	-		MIT1002_03878	0.73	+0.3
4,345,180	+		MIT1002_03878	0.75	-0.9
4,345,180	+		MIT1002_03878	0.75	+0.2
4,345,180	+		MIT1002_03878	0.75	+0.8
4,345,180	+		MIT1002_03878	0.75	-1.8
4,345,188	-		MIT1002_03878	0.76	+0.3
4,345,193	-		MIT1002_03878	0.77	-0.3
4,345,271	+		MIT1002_03878	0.85	+1.2
4,345,274	-		MIT1002_03878	0.85	+0.8
4,345,360	+				-0.5
4,345,368	-				+1.2
4,345,369	-				-0.3
4,345,384	-				-2.0
4,345,426	+				+0.0
4,345,434	-				-1.1
4,345,497	+		MIT1002_03879	0.18	+0.8
4,345,507	+		MIT1002_03879	0.20	+0.6
4,345,530	-		MIT1002_03879	0.26	+0.7
4,345,547	+		MIT1002_03879	0.30	+1.2
4,345,555	-		MIT1002_03879	0.31	+0.2
4,345,555	-		MIT1002_03879	0.31	+0.6
4,345,573	+		MIT1002_03879	0.36	+0.3
4,345,585	+		MIT1002_03879	0.38	+0.0
4,345,593	-		MIT1002_03879	0.40	-0.4
4,345,607	-		MIT1002_03879	0.43	-0.4
4,345,607	-		MIT1002_03879	0.43	+0.0
4,345,636	-		MIT1002_03879	0.50	-1.0
4,345,690	+		MIT1002_03879	0.63	+1.9
4,345,690	+		MIT1002_03879	0.63	+0.8
4,345,710	+		MIT1002_03879	0.67	+0.4
4,345,710	+		MIT1002_03879	0.67	+2.3
4,345,714	-		MIT1002_03879	0.68	+1.9
4,345,847	+				-0.2
4,346,065	+		MIT1002_03880	0.31	-1.1
4,346,071	+		MIT1002_03880	0.32	+0.2
4,346,095	+		MIT1002_03880	0.38	-0.6
4,346,096	+		MIT1002_03880	0.38	-1.1
4,346,104	-		MIT1002_03880	0.40	+2.5
4,346,134	-		MIT1002_03880	0.47	-0.9
4,346,143	-		MIT1002_03880	0.49	-0.1
4,346,191	+		MIT1002_03880	0.59	+1.2
4,346,247	+		MIT1002_03880	0.72	-0.4
4,346,301	-		MIT1002_03880	0.84	-0.5
4,346,311	-		MIT1002_03880	0.86	+0.1
4,346,327	+		MIT1002_03880	0.90	-2.5
4,346,362	+				-2.7
4,346,377	-				+0.9
4,346,427	+				+0.6
4,346,427	+				-1.4
4,346,518	+				-0.6
4,346,553	-				+2.2
4,346,626	+		MIT1002_03881	0.22	+1.0
4,346,626	+		MIT1002_03881	0.22	+0.1
4,346,644	+		MIT1002_03881	0.25	+0.0
4,346,644	+		MIT1002_03881	0.25	-1.5
4,346,647	-		MIT1002_03881	0.26	-1.9
4,346,652	-		MIT1002_03881	0.26	-1.0
4,346,666	-		MIT1002_03881	0.29	+0.3
4,346,666	-		MIT1002_03881	0.29	+0.3
4,346,693	-		MIT1002_03881	0.34	-0.3
4,346,817	+		MIT1002_03881	0.56	-0.1