Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03840

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
4,297,906	-		MIT1002_03839	0.50	+0.7
4,297,925	-		MIT1002_03839	0.51	-2.0
4,297,933	-		MIT1002_03839	0.51	-0.3
4,297,939	-		MIT1002_03839	0.52	+0.5
4,298,002	-		MIT1002_03839	0.56	+0.7
4,298,023	+		MIT1002_03839	0.57	+0.3
4,298,133	-		MIT1002_03839	0.65	+0.9
4,298,193	+		MIT1002_03839	0.69	+1.1
4,298,193	+		MIT1002_03839	0.69	+0.2
4,298,201	-		MIT1002_03839	0.69	-1.0
4,298,201	-		MIT1002_03839	0.69	+0.9
4,298,201	-		MIT1002_03839	0.69	+0.3
4,298,261	+		MIT1002_03839	0.73	-0.9
4,298,261	+		MIT1002_03839	0.73	-1.0
4,298,261	+		MIT1002_03839	0.73	+0.5
4,298,261	+		MIT1002_03839	0.73	+0.3
4,298,261	+		MIT1002_03839	0.73	+0.0
4,298,342	+		MIT1002_03839	0.79	+0.2
4,298,342	-		MIT1002_03839	0.79	+0.1
4,298,350	-		MIT1002_03839	0.79	+0.3
4,298,350	-		MIT1002_03839	0.79	-1.0
4,298,350	-		MIT1002_03839	0.79	-0.4
4,298,368	+		MIT1002_03839	0.81	+0.0
4,298,368	+		MIT1002_03839	0.81	+0.7
4,298,376	-		MIT1002_03839	0.81	+0.6
4,298,440	-		MIT1002_03839	0.85	-0.3
4,298,440	-		MIT1002_03839	0.85	-1.2
4,298,460	-		MIT1002_03839	0.87	+0.1
4,298,545	-				+0.8
4,298,593	-				+0.5
4,298,632	+				+0.3
4,298,642	+				+0.8
4,298,644	+				+0.9
4,298,650	-				-0.7
4,298,689	+				+0.9
4,298,689	+				+0.6
4,298,689	+				+1.3
4,298,749	-				+0.2
4,298,782	-				-1.5
4,298,784	-				-2.1
4,298,800	+				-1.0
4,298,800	+				+1.6
4,298,800	+				-1.5
4,298,808	-				+1.1
4,298,974	-				+0.3
4,299,043	+				+0.7
4,299,076	+				+0.7
4,299,084	-				-0.3
4,299,152	-		MIT1002_03840	0.10	+1.3
4,299,168	+		MIT1002_03840	0.11	-1.0
4,299,191	+		MIT1002_03840	0.12	-2.1
4,299,198	+		MIT1002_03840	0.12	+0.0
4,299,199	-		MIT1002_03840	0.12	-1.3
4,299,199	-		MIT1002_03840	0.12	+0.9
4,299,206	-		MIT1002_03840	0.12	-0.6
4,299,206	-		MIT1002_03840	0.12	-2.1
4,299,220	-		MIT1002_03840	0.13	-0.3
4,299,358	-		MIT1002_03840	0.18	+2.4
4,299,397	+		MIT1002_03840	0.20	-2.0
4,299,397	+		MIT1002_03840	0.20	+1.4
4,299,405	-		MIT1002_03840	0.20	+0.9
4,299,405	-		MIT1002_03840	0.20	+1.2
4,299,405	-		MIT1002_03840	0.20	-1.3
4,299,469	-		MIT1002_03840	0.23	+0.1
4,299,474	-		MIT1002_03840	0.23	-0.4
4,299,498	+		MIT1002_03840	0.24	+2.2
4,299,529	-		MIT1002_03840	0.25	-1.3
4,299,535	+		MIT1002_03840	0.25	-0.0
4,299,535	+		MIT1002_03840	0.25	-0.4
4,299,536	-		MIT1002_03840	0.25	-0.7
4,299,543	+		MIT1002_03840	0.26	+0.1
4,299,543	-		MIT1002_03840	0.26	-0.0
4,299,543	-		MIT1002_03840	0.26	+1.4
4,299,559	-		MIT1002_03840	0.26	+0.1
4,299,592	-		MIT1002_03840	0.28	-1.0
4,299,706	+		MIT1002_03840	0.32	+1.2
4,299,713	+		MIT1002_03840	0.32	+1.7
4,299,714	-		MIT1002_03840	0.32	-0.2
4,299,726	-		MIT1002_03840	0.33	+0.2
4,299,808	+		MIT1002_03840	0.36	-0.8
4,299,843	+		MIT1002_03840	0.37	+0.5
4,299,851	-		MIT1002_03840	0.38	+0.2
4,299,856	+		MIT1002_03840	0.38	-0.6
4,299,864	-		MIT1002_03840	0.38	-0.2
4,299,864	-		MIT1002_03840	0.38	-0.3
4,299,864	-		MIT1002_03840	0.38	-0.7
4,299,873	+		MIT1002_03840	0.39	-0.7
4,299,886	-		MIT1002_03840	0.39	-0.4
4,299,919	+		MIT1002_03840	0.40	+0.9
4,299,926	+		MIT1002_03840	0.41	+0.4
4,299,948	+		MIT1002_03840	0.41	-0.5
4,299,948	+		MIT1002_03840	0.41	+0.5
4,299,948	+		MIT1002_03840	0.41	-0.1
4,299,956	-		MIT1002_03840	0.42	-1.5
4,300,033	-		MIT1002_03840	0.45	-1.6
4,300,089	-		MIT1002_03840	0.47	+0.8
4,300,136	+		MIT1002_03840	0.49	+0.1
4,300,144	-		MIT1002_03840	0.49	-0.8
4,300,179	-		MIT1002_03840	0.51	+1.3
4,300,179	-		MIT1002_03840	0.51	-0.1
4,300,179	-		MIT1002_03840	0.51	-1.1
4,300,301	+		MIT1002_03840	0.55	+0.0
4,300,388	-		MIT1002_03840	0.59	+0.5
4,300,419	+		MIT1002_03840	0.60	-0.2
4,300,419	+		MIT1002_03840	0.60	+0.1
4,300,426	+		MIT1002_03840	0.60	+0.6
4,300,433	-		MIT1002_03840	0.60	-1.8
4,300,434	-		MIT1002_03840	0.61	+0.6
4,300,436	+		MIT1002_03840	0.61	+1.3
4,300,444	-		MIT1002_03840	0.61	-0.1
4,300,468	-		MIT1002_03840	0.62	+0.3
4,300,484	-		MIT1002_03840	0.62	-0.3
4,300,509	+		MIT1002_03840	0.63	+0.7
4,300,556	+		MIT1002_03840	0.65	+0.3
4,300,585	-		MIT1002_03840	0.66	+0.7
4,300,585	-		MIT1002_03840	0.66	+0.9
4,300,585	-		MIT1002_03840	0.66	+1.0
4,300,585	-		MIT1002_03840	0.66	+0.7
4,300,591	+		MIT1002_03840	0.67	-0.1
4,300,672	-		MIT1002_03840	0.70	-0.3
4,300,686	+		MIT1002_03840	0.70	-0.8
4,300,725	+		MIT1002_03840	0.72	+0.2
4,300,750	+		MIT1002_03840	0.73	-0.4
4,300,750	+		MIT1002_03840	0.73	+1.2
4,300,758	-		MIT1002_03840	0.73	-1.1
4,300,758	-		MIT1002_03840	0.73	+0.8
4,300,813	+		MIT1002_03840	0.75	-0.2
4,300,846	-		MIT1002_03840	0.77	-0.4
4,300,894	+		MIT1002_03840	0.79	-0.1
4,300,922	+		MIT1002_03840	0.80	+0.9
4,300,922	+		MIT1002_03840	0.80	-1.8
4,300,930	-		MIT1002_03840	0.80	-0.1
4,300,930	-		MIT1002_03840	0.80	-0.6
4,300,930	-		MIT1002_03840	0.80	+0.3
4,300,930	-		MIT1002_03840	0.80	-0.1
4,300,992	+		MIT1002_03840	0.82	-0.7
4,301,000	-		MIT1002_03840	0.83	-0.3
4,301,008	+		MIT1002_03840	0.83	+0.4
4,301,016	-		MIT1002_03840	0.83	+0.9
4,301,046	-		MIT1002_03840	0.84	-0.2
4,301,081	+		MIT1002_03840	0.86	+0.4
4,301,089	-		MIT1002_03840	0.86	-0.1
4,301,091	+		MIT1002_03840	0.86	+0.2
4,301,091	+		MIT1002_03840	0.86	+0.5
4,301,099	-		MIT1002_03840	0.87	-0.2
4,301,099	-		MIT1002_03840	0.87	+1.8
4,301,230	+				-1.0
4,301,305	+				-0.7
4,301,307	-				+0.5
4,301,343	+				-1.5
4,301,407	-				-0.3
4,301,459	+				+0.1
4,301,467	+				+0.4
4,301,520	-				+0.9
4,301,520	-				-0.9
4,301,521	-				+0.2
4,301,557	-				-2.2
4,301,571	-				+0.3
4,301,596	-		MIT1002_03841	0.11	+0.4
4,301,599	-		MIT1002_03841	0.11	+0.1
4,301,635	-		MIT1002_03841	0.14	-0.5
4,301,644	-		MIT1002_03841	0.15	+2.2
4,301,644	-		MIT1002_03841	0.15	-1.8
4,301,661	+		MIT1002_03841	0.16	-0.1
4,301,680	-		MIT1002_03841	0.18	+0.6
4,301,711	-		MIT1002_03841	0.20	-0.4
4,301,730	-		MIT1002_03841	0.22	-0.4
4,301,801	+		MIT1002_03841	0.27	+0.4
4,301,874	-		MIT1002_03841	0.33	+0.1
4,301,874	-		MIT1002_03841	0.33	+1.6
4,301,912	-		MIT1002_03841	0.36	+0.4
4,301,932	+		MIT1002_03841	0.38	-0.6
4,301,981	-		MIT1002_03841	0.42	+0.1
4,302,015	-		MIT1002_03841	0.44	+1.4
4,302,039	-		MIT1002_03841	0.46	+0.3
4,302,065	-		MIT1002_03841	0.48	+0.1
4,302,085	-		MIT1002_03841	0.50	-1.8
4,302,154	-		MIT1002_03841	0.55	+1.0
4,302,177	-		MIT1002_03841	0.57	-0.3
4,302,179	+		MIT1002_03841	0.57	-0.7
4,302,185	-		MIT1002_03841	0.58	+0.6
4,302,218	-		MIT1002_03841	0.60	+0.4
4,302,277	+		MIT1002_03841	0.65	+2.1
4,302,277	+		MIT1002_03841	0.65	-0.4
4,302,285	-		MIT1002_03841	0.66	+0.6
4,302,308	+		MIT1002_03841	0.68	+0.8
4,302,308	+		MIT1002_03841	0.68	+0.2
4,302,309	-		MIT1002_03841	0.68	+0.3
4,302,326	-		MIT1002_03841	0.69	-1.3
4,302,338	-		MIT1002_03841	0.70	-0.6
4,302,423	+		MIT1002_03841	0.77	-0.7
4,302,423	+		MIT1002_03841	0.77	+1.3
4,302,423	+		MIT1002_03841	0.77	+1.1
4,302,424	+		MIT1002_03841	0.77	-0.2
4,302,426	-		MIT1002_03841	0.77	+0.7
4,302,440	+		MIT1002_03841	0.78	+1.7
4,302,440	+		MIT1002_03841	0.78	-0.1