Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03726

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
4,161,495	-		MIT1002_03725	0.69	+0.8
4,161,560	+		MIT1002_03725	0.72	-0.8
4,161,600	-		MIT1002_03725	0.74	+0.7
4,161,640	-		MIT1002_03725	0.75	+1.1
4,161,679	+		MIT1002_03725	0.77	+1.5
4,161,709	+		MIT1002_03725	0.79	+0.8
4,161,820	+		MIT1002_03725	0.84	-0.6
4,161,841	+		MIT1002_03725	0.85	+0.2
4,161,873	+		MIT1002_03725	0.86	+0.3
4,162,003	+				-1.0
4,162,006	-				+1.0
4,162,055	+				-0.8
4,162,056	+				+0.1
4,162,064	-				+2.5
4,162,079	+				+0.2
4,162,079	+				+1.5
4,162,087	-				+0.7
4,162,087	-				-1.0
4,162,381	-				-0.3
4,162,411	-				-0.9
4,162,411	-				-0.6
4,162,424	+				+1.5
4,162,616	-		MIT1002_03726	0.18	-0.1
4,162,721	-		MIT1002_03726	0.29	+1.1
4,162,731	+		MIT1002_03726	0.30	+0.1
4,162,736	+		MIT1002_03726	0.30	+0.4
4,162,752	-		MIT1002_03726	0.32	+0.6
4,162,757	+		MIT1002_03726	0.32	+0.3
4,162,790	+		MIT1002_03726	0.36	-0.1
4,162,794	+		MIT1002_03726	0.36	+0.6
4,162,802	-		MIT1002_03726	0.37	-0.7
4,162,802	-		MIT1002_03726	0.37	-1.8
4,162,849	+		MIT1002_03726	0.42	+0.6
4,162,849	+		MIT1002_03726	0.42	-0.6
4,162,849	+		MIT1002_03726	0.42	+0.6
4,162,857	-		MIT1002_03726	0.43	+1.4
4,162,859	-		MIT1002_03726	0.43	+0.3
4,162,936	+		MIT1002_03726	0.51	+1.3
4,162,960	+		MIT1002_03726	0.53	-2.5
4,162,961	+		MIT1002_03726	0.53	-0.8
4,162,961	+		MIT1002_03726	0.53	-0.2
4,162,961	+		MIT1002_03726	0.53	+0.0
4,162,961	+		MIT1002_03726	0.53	+0.5
4,162,969	-		MIT1002_03726	0.54	+1.3
4,163,028	-		MIT1002_03726	0.60	-0.3
4,163,060	+		MIT1002_03726	0.64	-0.1
4,163,068	-		MIT1002_03726	0.64	-0.2
4,163,109	+		MIT1002_03726	0.69	-2.3
4,163,147	+		MIT1002_03726	0.73	-1.7
4,163,158	+		MIT1002_03726	0.74	-0.8
4,163,179	+		MIT1002_03726	0.76	-0.4
4,163,297	+		MIT1002_03726	0.88	-1.1
4,163,321	-				+0.8
4,163,321	-				-1.2
4,163,321	-				-0.4
4,163,367	-				-0.6
4,163,421	+				-0.4
4,163,430	+				+1.0
4,163,492	-				+0.0
4,163,497	-				-0.1
4,163,505	+				+0.1
4,163,506	+				-1.0
4,163,507	-				+0.6
4,163,514	-				-0.6
4,163,514	-				+0.8
4,163,536	+				-1.3
4,163,536	+				-0.2
4,163,555	+				-0.2
4,163,577	+				+0.9
4,163,577	+				+0.4
4,163,717	-				+0.1
4,163,758	+				-0.6
4,163,772	-				+0.4
4,163,773	+				+0.4
4,163,774	+				-0.4
4,163,774	+				+0.1
4,163,782	-				-0.5
4,163,782	-				-0.1
4,163,823	+				+0.0
4,164,191	+		MIT1002_03727	0.42	+0.7
4,164,208	+		MIT1002_03727	0.44	-1.3
4,164,208	+		MIT1002_03727	0.44	+0.4
4,164,216	-		MIT1002_03727	0.45	+0.2
4,164,216	-		MIT1002_03727	0.45	+1.6
4,164,216	-		MIT1002_03727	0.45	-0.5
4,164,251	+		MIT1002_03727	0.49	+0.4
4,164,266	-		MIT1002_03727	0.51	-0.2
4,164,279	+		MIT1002_03727	0.52	+0.2
4,164,279	+		MIT1002_03727	0.52	-0.4
4,164,279	+		MIT1002_03727	0.52	+0.2
4,164,279	+		MIT1002_03727	0.52	-0.8
4,164,287	-		MIT1002_03727	0.53	-0.4
4,164,386	+		MIT1002_03727	0.64	-0.1