Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03717

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
4,150,711	-		MIT1002_03716	0.34	-1.2
4,150,717	+		MIT1002_03716	0.34	-1.3
4,150,866	+		MIT1002_03716	0.45	-1.4
4,150,884	-		MIT1002_03716	0.47	+0.3
4,150,902	+		MIT1002_03716	0.48	-0.5
4,150,987	-		MIT1002_03716	0.54	-0.8
4,150,987	-		MIT1002_03716	0.54	-0.1
4,150,989	+		MIT1002_03716	0.54	-1.2
4,150,997	+		MIT1002_03716	0.55	+0.3
4,151,044	+		MIT1002_03716	0.58	+0.1
4,151,155	+		MIT1002_03716	0.66	-0.4
4,151,223	+		MIT1002_03716	0.71	+0.6
4,151,239	-		MIT1002_03716	0.72	-0.7
4,151,251	-		MIT1002_03716	0.73	+0.1
4,151,259	-		MIT1002_03716	0.74	-0.9
4,151,303	-		MIT1002_03716	0.77	-1.3
4,151,351	-		MIT1002_03716	0.81	+1.0
4,151,394	-		MIT1002_03716	0.84	+2.7
4,151,420	+		MIT1002_03716	0.86	-0.4
4,151,574	+				-0.2
4,151,574	+				-0.3
4,151,576	+				-0.1
4,151,598	+				-2.7
4,151,616	-				+1.5
4,151,618	+				-0.2
4,151,698	-				-1.3
4,151,704	-				-1.0
4,151,836	+		MIT1002_03717	0.23	-0.6
4,151,836	+		MIT1002_03717	0.23	-1.8
4,151,849	-		MIT1002_03717	0.25	+0.2
4,151,961	+		MIT1002_03717	0.43	+1.7
4,151,971	+		MIT1002_03717	0.45	-0.7
4,151,971	+		MIT1002_03717	0.45	-0.2
4,151,971	+		MIT1002_03717	0.45	-1.1
4,151,971	+		MIT1002_03717	0.45	+1.5
4,151,971	+		MIT1002_03717	0.45	+0.1
4,151,979	-		MIT1002_03717	0.46	+1.6
4,151,979	-		MIT1002_03717	0.46	+0.6
4,151,979	-		MIT1002_03717	0.46	-2.6
4,151,979	-		MIT1002_03717	0.46	+0.6
4,152,005	-		MIT1002_03717	0.50	-0.2
4,152,010	+		MIT1002_03717	0.51	-0.9
4,152,086	+		MIT1002_03717	0.63	+0.7
4,152,094	-		MIT1002_03717	0.65	-0.7
4,152,094	-		MIT1002_03717	0.65	-0.7
4,152,094	-		MIT1002_03717	0.65	-1.6
4,152,094	-		MIT1002_03717	0.65	-1.1
4,152,094	-		MIT1002_03717	0.65	-0.2
4,152,099	+		MIT1002_03717	0.65	-0.3
4,152,204	+		MIT1002_03717	0.82	-2.3
4,152,205	+		MIT1002_03717	0.82	-1.1
4,152,210	+		MIT1002_03717	0.83	+0.9
4,152,223	-		MIT1002_03717	0.85	-0.9
4,152,260	-				-0.4
4,152,281	+				-1.1
4,152,294	+				+1.1
4,152,302	-				-1.3
4,152,302	-				-0.6
4,152,337	+				-1.3
4,152,512	+		MIT1002_03718	0.44	+0.1
4,152,512	+		MIT1002_03718	0.44	-0.9
4,152,512	+		MIT1002_03718	0.44	+0.9
4,152,512	+		MIT1002_03718	0.44	+1.3
4,152,512	+		MIT1002_03718	0.44	-1.2
4,152,512	+		MIT1002_03718	0.44	-1.4
4,152,512	+		MIT1002_03718	0.44	-0.9
4,152,520	-		MIT1002_03718	0.46	-0.7
4,152,520	-		MIT1002_03718	0.46	-1.3
4,152,520	-		MIT1002_03718	0.46	+0.6
4,152,520	-		MIT1002_03718	0.46	-1.1
4,152,520	-		MIT1002_03718	0.46	-0.7
4,152,520	-		MIT1002_03718	0.46	-1.0
4,152,520	-		MIT1002_03718	0.46	+0.1
4,152,529	-		MIT1002_03718	0.48	-1.8
4,152,579	+		MIT1002_03718	0.61	+0.9
4,152,683	+		MIT1002_03718	0.86	+0.5
4,152,740	+				-0.4
4,152,748	-				-0.7
4,152,748	-				+0.6
4,152,748	-				+0.7
4,152,750	+				+1.7
4,152,802	+		MIT1002_03719	0.16	+0.1
4,152,816	+		MIT1002_03719	0.19	-1.0
4,152,819	-		MIT1002_03719	0.20	-0.8
4,152,825	-		MIT1002_03719	0.21	+2.2
4,152,874	+		MIT1002_03719	0.34	-0.3
4,152,956	+		MIT1002_03719	0.55	-0.5
4,152,964	-		MIT1002_03719	0.57	-0.3
4,152,974	-		MIT1002_03719	0.60	-3.4
4,153,015	+		MIT1002_03719	0.71	+1.1
4,153,029	-		MIT1002_03719	0.74	-0.9
4,153,086	+		MIT1002_03719	0.89	+0.7
4,153,091	+				+1.0
4,153,091	+				-0.3
4,153,091	+				-1.5
4,153,094	-				-2.7
4,153,099	-				+0.6
4,153,099	-				-0.8
4,153,145	+				+0.8
4,153,192	-				+0.6
4,153,299	+		MIT1002_03720	0.12	+0.8
4,153,299	+		MIT1002_03720	0.12	-0.8
4,153,300	-		MIT1002_03720	0.12	-0.9
4,153,307	-		MIT1002_03720	0.13	-0.6