Experiment: monoculture; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03685 and MIT1002_03686 are separated by 95 nucleotides MIT1002_03686 and MIT1002_03687 are separated by 224 nucleotides MIT1002_03687 and MIT1002_03688 are separated by 179 nucleotides MIT1002_03688 and MIT1002_03689 are separated by 202 nucleotides
MIT1002_03685: MIT1002_03685 - putative antibiotic transporter, at 4,117,904 to 4,118,506
_03685
MIT1002_03686: MIT1002_03686 - hypothetical protein, at 4,118,602 to 4,118,718
_03686
MIT1002_03687: MIT1002_03687 - hypothetical protein, at 4,118,943 to 4,119,125
_03687
MIT1002_03688: MIT1002_03688 - Peptidase B, at 4,119,305 to 4,120,588
_03688
MIT1002_03689: MIT1002_03689 - Sugar fermentation stimulation protein A, at 4,120,791 to 4,121,507
_03689
Position (kb) 4119
4120
4121 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4118.435 kb on + strand, within MIT1002_03685 at 4118.435 kb on + strand, within MIT1002_03685 at 4118.518 kb on + strand at 4118.523 kb on + strand at 4118.530 kb on + strand at 4118.538 kb on - strand at 4118.544 kb on - strand at 4118.561 kb on - strand at 4118.633 kb on + strand, within MIT1002_03686 at 4118.641 kb on - strand, within MIT1002_03686 at 4118.821 kb on + strand at 4118.843 kb on - strand at 4118.877 kb on + strand at 4118.964 kb on - strand, within MIT1002_03687 at 4119.061 kb on - strand, within MIT1002_03687 at 4119.071 kb on - strand, within MIT1002_03687 at 4119.117 kb on - strand at 4119.219 kb on + strand at 4119.222 kb on + strand at 4119.277 kb on + strand at 4119.309 kb on + strand at 4119.355 kb on + strand at 4119.400 kb on - strand at 4119.426 kb on - strand at 4119.507 kb on - strand, within MIT1002_03688 at 4119.526 kb on + strand, within MIT1002_03688 at 4119.534 kb on - strand, within MIT1002_03688 at 4119.541 kb on - strand, within MIT1002_03688 at 4119.630 kb on + strand, within MIT1002_03688 at 4119.649 kb on + strand, within MIT1002_03688 at 4119.649 kb on + strand, within MIT1002_03688 at 4119.657 kb on - strand, within MIT1002_03688 at 4119.657 kb on - strand, within MIT1002_03688 at 4119.749 kb on + strand, within MIT1002_03688 at 4119.749 kb on + strand, within MIT1002_03688 at 4119.771 kb on + strand, within MIT1002_03688 at 4119.771 kb on + strand, within MIT1002_03688 at 4119.771 kb on + strand, within MIT1002_03688 at 4119.779 kb on - strand, within MIT1002_03688 at 4119.779 kb on - strand, within MIT1002_03688 at 4119.779 kb on - strand, within MIT1002_03688 at 4119.789 kb on - strand, within MIT1002_03688 at 4119.789 kb on - strand, within MIT1002_03688 at 4119.814 kb on - strand, within MIT1002_03688 at 4119.839 kb on - strand, within MIT1002_03688 at 4119.848 kb on + strand, within MIT1002_03688 at 4119.848 kb on - strand, within MIT1002_03688 at 4119.860 kb on + strand, within MIT1002_03688 at 4119.868 kb on - strand, within MIT1002_03688 at 4119.868 kb on - strand, within MIT1002_03688 at 4119.976 kb on + strand, within MIT1002_03688 at 4119.984 kb on - strand, within MIT1002_03688 at 4119.991 kb on - strand, within MIT1002_03688 at 4119.998 kb on + strand, within MIT1002_03688 at 4120.056 kb on + strand, within MIT1002_03688 at 4120.130 kb on + strand, within MIT1002_03688 at 4120.133 kb on - strand, within MIT1002_03688 at 4120.133 kb on - strand, within MIT1002_03688 at 4120.146 kb on - strand, within MIT1002_03688 at 4120.199 kb on + strand, within MIT1002_03688 at 4120.200 kb on - strand, within MIT1002_03688 at 4120.207 kb on - strand, within MIT1002_03688 at 4120.232 kb on + strand, within MIT1002_03688 at 4120.349 kb on - strand, within MIT1002_03688 at 4120.387 kb on - strand, within MIT1002_03688 at 4120.408 kb on + strand, within MIT1002_03688 at 4120.408 kb on + strand, within MIT1002_03688 at 4120.416 kb on - strand, within MIT1002_03688 at 4120.416 kb on - strand, within MIT1002_03688 at 4120.423 kb on + strand, within MIT1002_03688 at 4120.423 kb on + strand, within MIT1002_03688 at 4120.423 kb on + strand, within MIT1002_03688 at 4120.431 kb on - strand, within MIT1002_03688 at 4120.473 kb on + strand at 4120.476 kb on - strand at 4120.498 kb on - strand at 4120.530 kb on - strand at 4120.530 kb on - strand at 4120.543 kb on - strand at 4120.549 kb on - strand at 4120.705 kb on + strand at 4120.705 kb on + strand at 4120.705 kb on + strand at 4120.713 kb on - strand at 4120.713 kb on - strand at 4120.713 kb on - strand at 4120.713 kb on - strand at 4120.713 kb on - strand at 4120.717 kb on - strand at 4120.937 kb on - strand, within MIT1002_03689 at 4120.990 kb on - strand, within MIT1002_03689 at 4120.992 kb on - strand, within MIT1002_03689 at 4121.188 kb on + strand, within MIT1002_03689 at 4121.207 kb on + strand, within MIT1002_03689 at 4121.241 kb on + strand, within MIT1002_03689 at 4121.251 kb on - strand, within MIT1002_03689 at 4121.282 kb on - strand, within MIT1002_03689 at 4121.284 kb on + strand, within MIT1002_03689 at 4121.284 kb on + strand, within MIT1002_03689 at 4121.284 kb on + strand, within MIT1002_03689 at 4121.284 kb on + strand, within MIT1002_03689 at 4121.284 kb on + strand, within MIT1002_03689 at 4121.284 kb on + strand, within MIT1002_03689 at 4121.284 kb on + strand, within MIT1002_03689 at 4121.284 kb on + strand, within MIT1002_03689 at 4121.292 kb on - strand, within MIT1002_03689 at 4121.292 kb on - strand, within MIT1002_03689 at 4121.292 kb on - strand, within MIT1002_03689 at 4121.292 kb on - strand, within MIT1002_03689 at 4121.328 kb on + strand, within MIT1002_03689 at 4121.328 kb on + strand, within MIT1002_03689 at 4121.336 kb on - strand, within MIT1002_03689 at 4121.336 kb on - strand, within MIT1002_03689 at 4121.338 kb on + strand, within MIT1002_03689 at 4121.338 kb on + strand, within MIT1002_03689 at 4121.346 kb on - strand, within MIT1002_03689 at 4121.348 kb on - strand, within MIT1002_03689 at 4121.350 kb on + strand, within MIT1002_03689 at 4121.422 kb on + strand, within MIT1002_03689
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 3 remove 4,118,435 + MIT1002_03685 0.88 +0.4 4,118,435 + MIT1002_03685 0.88 -0.5 4,118,518 + +0.9 4,118,523 + +0.2 4,118,530 + -1.2 4,118,538 - +0.8 4,118,544 - -0.9 4,118,561 - +3.4 4,118,633 + MIT1002_03686 0.26 +2.3 4,118,641 - MIT1002_03686 0.33 +0.0 4,118,821 + +1.4 4,118,843 - +0.4 4,118,877 + -2.0 4,118,964 - MIT1002_03687 0.11 +0.9 4,119,061 - MIT1002_03687 0.64 -0.6 4,119,071 - MIT1002_03687 0.70 +1.5 4,119,117 - -0.2 4,119,219 + -0.5 4,119,222 + -0.2 4,119,277 + +0.3 4,119,309 + -1.5 4,119,355 + +0.0 4,119,400 - -0.1 4,119,426 - +0.8 4,119,507 - MIT1002_03688 0.16 -0.4 4,119,526 + MIT1002_03688 0.17 +0.3 4,119,534 - MIT1002_03688 0.18 +0.1 4,119,541 - MIT1002_03688 0.18 -1.4 4,119,630 + MIT1002_03688 0.25 +1.7 4,119,649 + MIT1002_03688 0.27 -0.3 4,119,649 + MIT1002_03688 0.27 -0.9 4,119,657 - MIT1002_03688 0.27 +0.3 4,119,657 - MIT1002_03688 0.27 -0.7 4,119,749 + MIT1002_03688 0.35 -0.5 4,119,749 + MIT1002_03688 0.35 +0.6 4,119,771 + MIT1002_03688 0.36 -0.7 4,119,771 + MIT1002_03688 0.36 -0.1 4,119,771 + MIT1002_03688 0.36 +0.4 4,119,779 - MIT1002_03688 0.37 -0.7 4,119,779 - MIT1002_03688 0.37 -1.1 4,119,779 - MIT1002_03688 0.37 +0.9 4,119,789 - MIT1002_03688 0.38 -0.3 4,119,789 - MIT1002_03688 0.38 -0.1 4,119,814 - MIT1002_03688 0.40 -0.4 4,119,839 - MIT1002_03688 0.42 +0.7 4,119,848 + MIT1002_03688 0.42 +0.3 4,119,848 - MIT1002_03688 0.42 -0.8 4,119,860 + MIT1002_03688 0.43 +0.9 4,119,868 - MIT1002_03688 0.44 -0.2 4,119,868 - MIT1002_03688 0.44 -0.4 4,119,976 + MIT1002_03688 0.52 +0.4 4,119,984 - MIT1002_03688 0.53 +0.2 4,119,991 - MIT1002_03688 0.53 +1.3 4,119,998 + MIT1002_03688 0.54 -1.5 4,120,056 + MIT1002_03688 0.58 -2.2 4,120,130 + MIT1002_03688 0.64 -0.4 4,120,133 - MIT1002_03688 0.64 +2.3 4,120,133 - MIT1002_03688 0.64 -1.0 4,120,146 - MIT1002_03688 0.65 +0.5 4,120,199 + MIT1002_03688 0.70 -0.4 4,120,200 - MIT1002_03688 0.70 +0.1 4,120,207 - MIT1002_03688 0.70 -0.4 4,120,232 + MIT1002_03688 0.72 +0.6 4,120,349 - MIT1002_03688 0.81 -0.8 4,120,387 - MIT1002_03688 0.84 -1.4 4,120,408 + MIT1002_03688 0.86 +1.2 4,120,408 + MIT1002_03688 0.86 -0.2 4,120,416 - MIT1002_03688 0.87 -0.7 4,120,416 - MIT1002_03688 0.87 -2.0 4,120,423 + MIT1002_03688 0.87 +0.5 4,120,423 + MIT1002_03688 0.87 -1.1 4,120,423 + MIT1002_03688 0.87 -0.1 4,120,431 - MIT1002_03688 0.88 -2.0 4,120,473 + +0.6 4,120,476 - -0.2 4,120,498 - -0.4 4,120,530 - -0.1 4,120,530 - -0.5 4,120,543 - +1.9 4,120,549 - -0.9 4,120,705 + -2.1 4,120,705 + -0.9 4,120,705 + +0.5 4,120,713 - -0.0 4,120,713 - -0.5 4,120,713 - -1.9 4,120,713 - +0.9 4,120,713 - -0.3 4,120,717 - +0.5 4,120,937 - MIT1002_03689 0.20 -1.2 4,120,990 - MIT1002_03689 0.28 +0.2 4,120,992 - MIT1002_03689 0.28 -0.4 4,121,188 + MIT1002_03689 0.55 +0.7 4,121,207 + MIT1002_03689 0.58 -0.8 4,121,241 + MIT1002_03689 0.63 -0.1 4,121,251 - MIT1002_03689 0.64 +0.1 4,121,282 - MIT1002_03689 0.68 +0.0 4,121,284 + MIT1002_03689 0.69 +0.9 4,121,284 + MIT1002_03689 0.69 -0.2 4,121,284 + MIT1002_03689 0.69 -0.5 4,121,284 + MIT1002_03689 0.69 -0.1 4,121,284 + MIT1002_03689 0.69 +0.1 4,121,284 + MIT1002_03689 0.69 +0.4 4,121,284 + MIT1002_03689 0.69 +1.2 4,121,284 + MIT1002_03689 0.69 +0.8 4,121,292 - MIT1002_03689 0.70 -1.9 4,121,292 - MIT1002_03689 0.70 +0.7 4,121,292 - MIT1002_03689 0.70 -0.6 4,121,292 - MIT1002_03689 0.70 -0.1 4,121,328 + MIT1002_03689 0.75 -2.8 4,121,328 + MIT1002_03689 0.75 -0.5 4,121,336 - MIT1002_03689 0.76 -1.1 4,121,336 - MIT1002_03689 0.76 -0.1 4,121,338 + MIT1002_03689 0.76 +0.1 4,121,338 + MIT1002_03689 0.76 +0.7 4,121,346 - MIT1002_03689 0.77 +0.9 4,121,348 - MIT1002_03689 0.78 -0.9 4,121,350 + MIT1002_03689 0.78 +0.0 4,121,422 + MIT1002_03689 0.88 +1.6
Or see this region's nucleotide sequence