Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03462

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
3,871,173	-		MIT1002_03461	0.72	-0.5
3,871,204	-		MIT1002_03461	0.74	+0.3
3,871,222	-		MIT1002_03461	0.74	-0.2
3,871,350	+		MIT1002_03461	0.80	-0.4
3,871,358	-		MIT1002_03461	0.80	-0.6
3,871,394	+		MIT1002_03461	0.82	-0.1
3,871,435	+		MIT1002_03461	0.84	-1.4
3,871,442	+		MIT1002_03461	0.84	+0.5
3,871,443	-		MIT1002_03461	0.84	-1.1
3,871,443	-		MIT1002_03461	0.84	+0.3
3,871,450	+		MIT1002_03461	0.84	-1.4
3,871,488	-		MIT1002_03461	0.86	+0.4
3,871,502	+		MIT1002_03461	0.86	+0.0
3,871,510	-		MIT1002_03461	0.87	-0.6
3,871,614	-				+0.3
3,871,614	-				-0.6
3,871,614	-				+0.7
3,871,711	+				-0.2
3,871,719	-				+1.0
3,871,733	+				+0.8
3,871,750	+				+0.4
3,871,868	-				+0.9
3,871,868	-				-0.6
3,871,883	+				+0.1
3,871,916	+				+0.6
3,871,932	-				-1.0
3,871,940	+				+0.1
3,871,948	-				+0.0
3,871,948	-				-0.2
3,872,001	-				+0.5
3,872,001	-				-0.5
3,872,013	-				+0.6
3,872,019	+				+0.1
3,872,054	+				-2.1
3,872,093	+				-0.6
3,872,159	-				+0.6
3,872,174	+				-0.5
3,872,212	-				+0.3
3,872,336	-		MIT1002_03462	0.14	+0.1
3,872,336	-		MIT1002_03462	0.14	-0.5
3,872,578	+		MIT1002_03462	0.30	+0.5
3,872,583	+		MIT1002_03462	0.31	+0.4
3,872,583	+		MIT1002_03462	0.31	-0.6
3,872,583	+		MIT1002_03462	0.31	+0.6
3,872,591	-		MIT1002_03462	0.31	+0.3
3,872,591	-		MIT1002_03462	0.31	-1.0
3,872,648	-		MIT1002_03462	0.35	+0.5
3,872,650	-		MIT1002_03462	0.35	+0.8
3,872,767	+		MIT1002_03462	0.43	+0.7
3,872,780	-		MIT1002_03462	0.44	+0.3
3,872,780	-		MIT1002_03462	0.44	-0.8
3,872,790	-		MIT1002_03462	0.44	+0.1
3,872,810	+		MIT1002_03462	0.46	+0.5
3,872,810	+		MIT1002_03462	0.46	+0.2
3,872,878	+		MIT1002_03462	0.50	+0.2
3,872,878	+		MIT1002_03462	0.50	+0.7
3,872,948	-		MIT1002_03462	0.55	-1.0
3,872,963	+		MIT1002_03462	0.56	+0.6
3,872,971	-		MIT1002_03462	0.57	+1.2
3,873,037	+		MIT1002_03462	0.61	-0.9
3,873,037	+		MIT1002_03462	0.61	-0.4
3,873,040	-		MIT1002_03462	0.61	-0.5
3,873,045	-		MIT1002_03462	0.62	+0.4
3,873,050	-		MIT1002_03462	0.62	+0.4
3,873,058	-		MIT1002_03462	0.62	+0.8
3,873,058	-		MIT1002_03462	0.62	+0.0
3,873,180	-		MIT1002_03462	0.71	+0.1
3,873,206	+		MIT1002_03462	0.72	-0.5
3,873,207	+		MIT1002_03462	0.72	+0.3
3,873,214	-		MIT1002_03462	0.73	-0.1
3,873,214	-		MIT1002_03462	0.73	-0.1
3,873,225	+		MIT1002_03462	0.74	+1.0
3,873,226	-		MIT1002_03462	0.74	+0.6
3,873,226	-		MIT1002_03462	0.74	+0.6
3,873,233	-		MIT1002_03462	0.74	+0.6
3,873,233	-		MIT1002_03462	0.74	-1.5
3,873,233	-		MIT1002_03462	0.74	+0.7
3,873,234	-		MIT1002_03462	0.74	+0.6
3,873,253	+		MIT1002_03462	0.75	-0.5
3,873,268	-		MIT1002_03462	0.76	+0.5
3,873,451	-		MIT1002_03462	0.89	+0.3
3,873,555	+				-0.2
3,873,555	-				+1.0
3,873,753	+		MIT1002_03463	0.22	+1.4
3,873,753	+		MIT1002_03463	0.22	+0.2
3,873,761	-		MIT1002_03463	0.23	-0.6
3,873,802	+		MIT1002_03463	0.31	-0.6
3,873,802	+		MIT1002_03463	0.31	+0.8
3,873,912	-		MIT1002_03463	0.52	-0.2
3,873,987	+		MIT1002_03463	0.66	-0.2
3,874,018	-		MIT1002_03463	0.72	+1.6
3,874,050	-		MIT1002_03463	0.78	-1.6
3,874,065	+		MIT1002_03463	0.80	-0.4
3,874,361	+		MIT1002_03464	0.27	-0.3
3,874,369	-		MIT1002_03464	0.29	+0.9
3,874,396	-		MIT1002_03464	0.33	-0.6
3,874,405	+		MIT1002_03464	0.34	+1.5
3,874,425	+		MIT1002_03464	0.38	+1.7
3,874,431	-		MIT1002_03464	0.39	-0.9
3,874,498	+		MIT1002_03464	0.49	-0.8
3,874,523	+		MIT1002_03464	0.53	+0.7
3,874,564	-		MIT1002_03464	0.60	-2.5
3,874,587	-		MIT1002_03464	0.64	+2.8