Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03137

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
3,492,885	-		MIT1002_03135	0.86	-1.4
3,492,897	+		MIT1002_03135	0.86	-0.1
3,492,905	-		MIT1002_03135	0.87	+0.9
3,492,918	+		MIT1002_03135	0.88	+0.5
3,493,188	+		MIT1002_03136	0.11	+1.1
3,493,238	+		MIT1002_03136	0.20	+1.4
3,493,246	-		MIT1002_03136	0.21	+0.4
3,493,271	-		MIT1002_03136	0.26	+2.1
3,493,276	-		MIT1002_03136	0.27	-1.2
3,493,276	-		MIT1002_03136	0.27	+0.2
3,493,409	+		MIT1002_03136	0.51	-0.8
3,493,417	+		MIT1002_03136	0.52	-0.5
3,493,417	-		MIT1002_03136	0.52	+1.7
3,493,531	+		MIT1002_03136	0.73	-0.2
3,493,546	+		MIT1002_03136	0.75	-0.1
3,493,612	-		MIT1002_03136	0.87	+0.5
3,493,637	-				+0.7
3,493,637	-				+0.2
3,493,692	+				+0.7
3,493,700	-				+0.1
3,493,717	-				-1.6
3,493,740	+				+1.2
3,493,855	-				+2.0
3,493,872	-				+0.8
3,493,901	+				+1.5
3,493,945	+				+0.7
3,493,955	+				+0.4
3,494,012	+				-0.9
3,494,015	-				+0.1
3,494,024	+				-2.0
3,494,032	-				-0.3
3,494,057	-				-1.0
3,494,105	-				-1.4
3,494,198	-		MIT1002_03137	0.14	-1.0
3,494,241	+		MIT1002_03137	0.16	-2.1
3,494,242	+		MIT1002_03137	0.16	-1.5
3,494,249	+		MIT1002_03137	0.16	-1.4
3,494,249	-		MIT1002_03137	0.16	-1.4
3,494,250	-		MIT1002_03137	0.16	+0.1
3,494,297	-		MIT1002_03137	0.18	-0.3
3,494,395	+		MIT1002_03137	0.22	-2.2
3,494,485	+		MIT1002_03137	0.26	-1.4
3,494,508	-		MIT1002_03137	0.27	-1.7
3,494,549	+		MIT1002_03137	0.29	-0.3
3,494,639	+		MIT1002_03137	0.33	-2.2
3,494,647	-		MIT1002_03137	0.33	+0.1
3,494,835	+		MIT1002_03137	0.41	-1.5
3,494,988	+		MIT1002_03137	0.47	-0.3
3,494,988	+		MIT1002_03137	0.47	-0.4
3,494,996	-		MIT1002_03137	0.48	-1.4
3,494,996	-		MIT1002_03137	0.48	-0.3
3,495,137	+		MIT1002_03137	0.54	-0.4
3,495,166	+		MIT1002_03137	0.55	-0.4
3,495,171	+		MIT1002_03137	0.55	-0.1
3,495,174	-		MIT1002_03137	0.55	-2.1
3,495,247	-		MIT1002_03137	0.58	-0.3
3,495,252	-		MIT1002_03137	0.59	-1.3
3,495,285	+		MIT1002_03137	0.60	+0.4
3,495,285	+		MIT1002_03137	0.60	-0.1
3,495,333	-		MIT1002_03137	0.62	+0.1
3,495,337	+		MIT1002_03137	0.62	-0.1
3,495,337	+		MIT1002_03137	0.62	-0.6
3,495,345	-		MIT1002_03137	0.63	+0.6
3,495,492	-		MIT1002_03137	0.69	-1.1
3,495,532	-		MIT1002_03137	0.71	-0.3
3,495,662	-		MIT1002_03137	0.76	-1.5
3,495,775	-		MIT1002_03137	0.81	-0.9
3,495,821	-		MIT1002_03137	0.83	-1.7
3,495,854	-		MIT1002_03137	0.84	-0.9
3,495,856	+		MIT1002_03137	0.84	-1.7
3,495,864	-		MIT1002_03137	0.85	-2.0
3,495,864	-		MIT1002_03137	0.85	-1.0
3,495,865	-		MIT1002_03137	0.85	-0.1
3,495,885	-		MIT1002_03137	0.86	+0.4
3,495,930	+		MIT1002_03137	0.87	+0.4
3,496,049	+				+0.4
3,496,057	-				-2.3
3,496,109	-				-1.9
3,496,111	+				-1.2
3,496,143	+				-0.3
3,496,150	+				+0.4
3,496,150	+				-0.4
3,496,158	-				-0.3
3,496,158	-				-0.1
3,496,255	+				+1.0
3,496,267	-				+0.9
3,496,299	+				-0.1
3,496,315	-				-0.4
3,496,315	-				-0.9
3,496,330	-				-1.2
3,496,371	+				+0.5
3,496,390	-				+0.0
3,496,390	-				+1.1
3,496,410	-				+0.4
3,496,414	+				+0.2
3,496,460	+		MIT1002_03138	0.14	-0.9
3,496,460	+		MIT1002_03138	0.14	+1.0
3,496,468	-		MIT1002_03138	0.15	-0.3
3,496,510	+		MIT1002_03138	0.20	-1.1
3,496,603	+		MIT1002_03138	0.30	-0.1
3,496,722	+		MIT1002_03138	0.42	-0.4
3,496,749	+		MIT1002_03138	0.45	-0.4
3,496,749	+		MIT1002_03138	0.45	-0.6
3,496,757	-		MIT1002_03138	0.46	+0.3
3,496,757	-		MIT1002_03138	0.46	-1.2
3,496,757	-		MIT1002_03138	0.46	-0.3
3,496,757	-		MIT1002_03138	0.46	-0.3
3,496,796	-		MIT1002_03138	0.50	-0.4
3,496,814	-		MIT1002_03138	0.52	+0.2
3,496,826	+		MIT1002_03138	0.54	-0.4
3,496,826	-		MIT1002_03138	0.54	+0.3
3,496,893	+		MIT1002_03138	0.61	+1.5
3,496,893	+		MIT1002_03138	0.61	-0.1
3,496,901	-		MIT1002_03138	0.62	+1.6
3,496,901	-		MIT1002_03138	0.62	+0.2
3,496,907	-		MIT1002_03138	0.62	-0.1
3,496,907	-		MIT1002_03138	0.62	-0.5
3,496,907	-		MIT1002_03138	0.62	+0.3
3,496,940	+		MIT1002_03138	0.66	+0.0
3,496,940	+		MIT1002_03138	0.66	+0.4
3,496,945	+		MIT1002_03138	0.66	-0.4
3,496,953	-		MIT1002_03138	0.67	-2.5
3,497,012	+		MIT1002_03138	0.73	-0.2
3,497,033	-		MIT1002_03138	0.76	+1.0
3,497,075	+		MIT1002_03138	0.80	-0.6
3,497,083	-		MIT1002_03138	0.81	+2.4
3,497,102	-		MIT1002_03138	0.83	-0.1
3,497,158	+		MIT1002_03138	0.89	-0.4
3,497,173	+				+1.5