Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03035

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
3,381,682	-		MIT1002_03034	0.14	-1.2
3,381,691	-		MIT1002_03034	0.16	+1.2
3,381,938	-		MIT1002_03034	0.70	+0.7
3,381,938	-		MIT1002_03034	0.70	+0.4
3,381,953	-		MIT1002_03034	0.73	-0.6
3,381,964	-		MIT1002_03034	0.76	-0.6
3,381,974	-		MIT1002_03034	0.78	-1.8
3,381,974	-		MIT1002_03034	0.78	-2.0
3,382,224	+				+0.1
3,382,237	+				-0.2
3,382,237	+				-1.5
3,382,290	+				-2.2
3,382,292	-				+1.1
3,382,421	-				+0.7
3,382,462	-				-0.1
3,382,465	+				-2.0
3,382,503	+				-1.6
3,382,506	-				-0.6
3,382,606	+				-0.6
3,382,861	-		MIT1002_03035	0.36	+1.4
3,382,861	-		MIT1002_03035	0.36	-0.2
3,382,861	-		MIT1002_03035	0.36	+2.2
3,382,921	+		MIT1002_03035	0.43	-0.9
3,382,921	+		MIT1002_03035	0.43	-0.2
3,382,929	-		MIT1002_03035	0.44	-0.7
3,382,929	-		MIT1002_03035	0.44	-2.8
3,382,931	+		MIT1002_03035	0.44	+0.3
3,382,948	+		MIT1002_03035	0.46	+1.8
3,382,956	-		MIT1002_03035	0.47	-0.9
3,382,956	-		MIT1002_03035	0.47	+0.7
3,383,034	-		MIT1002_03035	0.57	+0.0
3,383,168	+		MIT1002_03035	0.73	+0.2
3,383,229	+		MIT1002_03035	0.80	-0.5
3,383,229	+		MIT1002_03035	0.80	-0.5
3,383,237	+		MIT1002_03035	0.81	-0.6
3,383,237	+		MIT1002_03035	0.81	+0.5
3,383,237	-		MIT1002_03035	0.81	+0.9
3,383,245	-		MIT1002_03035	0.82	-0.6
3,383,285	+		MIT1002_03035	0.87	+0.1
3,383,295	+		MIT1002_03035	0.88	+1.7
3,383,317	+				-2.0
3,383,371	-				+1.5
3,383,386	+				-0.2
3,383,394	-				+0.9
3,383,447	-				-0.7
3,383,447	-				+0.4
3,383,539	-				-0.7
3,383,655	+		MIT1002_03036	0.14	-0.3
3,383,681	-		MIT1002_03036	0.17	+1.4
3,383,724	+		MIT1002_03036	0.23	-0.5
3,383,727	+		MIT1002_03036	0.23	-0.3
3,383,764	+		MIT1002_03036	0.28	-1.1
3,383,792	+		MIT1002_03036	0.31	-1.3
3,383,792	+		MIT1002_03036	0.31	+0.7
3,383,800	-		MIT1002_03036	0.32	-2.0
3,383,801	-		MIT1002_03036	0.33	-2.0
3,383,801	-		MIT1002_03036	0.33	-0.1
3,383,838	+		MIT1002_03036	0.37	-0.5
3,383,966	-		MIT1002_03036	0.54	-0.4
3,384,019	-		MIT1002_03036	0.61	-1.1
3,384,102	+		MIT1002_03036	0.72	-1.0
3,384,113	+		MIT1002_03036	0.73	+0.3
3,384,121	-		MIT1002_03036	0.74	+0.1
3,384,121	-		MIT1002_03036	0.74	-0.9
3,384,126	-		MIT1002_03036	0.75	-2.7
3,384,129	+		MIT1002_03036	0.75	-1.7
3,384,254	-				-0.2
3,384,353	+				+0.4