Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02997

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
3,334,229	+		MIT1002_02996	0.52	-0.5
3,334,229	+		MIT1002_02996	0.52	-1.4
3,334,237	-		MIT1002_02996	0.53	+0.7
3,334,244	+		MIT1002_02996	0.54	+0.0
3,334,252	-		MIT1002_02996	0.55	+1.0
3,334,252	-		MIT1002_02996	0.55	+0.6
3,334,252	-		MIT1002_02996	0.55	-1.8
3,334,286	+		MIT1002_02996	0.59	+2.3
3,334,289	-		MIT1002_02996	0.60	-0.7
3,334,297	+		MIT1002_02996	0.60	+0.9
3,334,348	+		MIT1002_02996	0.67	+0.7
3,334,374	+		MIT1002_02996	0.70	+1.5
3,334,380	-		MIT1002_02996	0.71	+0.2
3,334,382	-		MIT1002_02996	0.71	+0.1
3,334,385	-		MIT1002_02996	0.71	-1.4
3,334,385	-		MIT1002_02996	0.71	-1.4
3,334,471	-		MIT1002_02996	0.82	-2.7
3,334,478	+		MIT1002_02996	0.82	-0.4
3,334,503	-		MIT1002_02996	0.85	-1.4
3,334,539	+		MIT1002_02996	0.90	+0.4
3,334,651	+				-0.5
3,334,665	+				-1.2
3,334,682	+				-0.5
3,334,709	-				-0.9
3,334,714	+				-0.3
3,334,755	-				+0.1
3,334,812	+				-0.4
3,334,812	+				+0.6
3,334,820	-				-1.0
3,334,820	-				+0.4
3,334,820	-				-0.7
3,334,866	+				-0.1
3,334,877	+				+0.7
3,334,882	+				-2.4
3,334,885	-				+0.4
3,334,895	-				-1.4
3,334,895	-				-0.5
3,334,990	+				-0.8
3,335,157	-				-0.7
3,335,159	+				+0.3
3,335,190	+				-1.5
3,335,195	+				+0.8
3,335,195	+				+1.1
3,335,197	+				-1.2
3,335,203	-				-1.4
3,335,468	+		MIT1002_02997	0.34	-0.7
3,335,518	+		MIT1002_02997	0.41	-0.0
3,335,525	+		MIT1002_02997	0.42	+1.2
3,335,664	+		MIT1002_02997	0.62	-0.1
3,335,706	-		MIT1002_02997	0.68	-0.9
3,335,706	-		MIT1002_02997	0.68	+0.3
3,335,729	-		MIT1002_02997	0.71	+0.3
3,335,741	+		MIT1002_02997	0.73	-0.8
3,335,749	-		MIT1002_02997	0.74	+0.4
3,335,812	+		MIT1002_02997	0.83	+1.4
3,335,820	-		MIT1002_02997	0.84	-0.0
3,335,866	+				-0.1
3,335,872	-				-0.3
3,336,052	+				-0.3
3,336,060	-				-0.3
3,336,079	+				+0.7
3,336,079	+				-0.5
3,336,087	-				-1.1
3,336,103	+				+1.0
3,336,103	+				+2.3
3,336,104	-				+0.3
3,336,104	-				+1.1
3,336,111	-				+0.9
3,336,111	-				-1.4
3,336,111	-				+0.5
3,336,146	+				+1.4
3,336,189	-				+0.5
3,336,393	+				+0.9
3,336,410	-				-0.1
3,336,536	+		MIT1002_02998	0.14	-0.1
3,336,544	-		MIT1002_02998	0.14	+0.7
3,336,544	-		MIT1002_02998	0.14	-0.1
3,336,546	+		MIT1002_02998	0.14	+0.6
3,336,657	-		MIT1002_02998	0.18	-0.2
3,336,684	-		MIT1002_02998	0.19	+0.7
3,336,694	-		MIT1002_02998	0.19	+0.7
3,336,739	+		MIT1002_02998	0.20	-0.9
3,336,739	+		MIT1002_02998	0.20	-0.5
3,336,747	-		MIT1002_02998	0.21	+0.4
3,336,764	+		MIT1002_02998	0.21	-1.6
3,336,764	+		MIT1002_02998	0.21	-0.3
3,336,764	+		MIT1002_02998	0.21	+1.6
3,336,765	-		MIT1002_02998	0.21	+0.6
3,336,767	-		MIT1002_02998	0.21	+0.0
3,336,772	-		MIT1002_02998	0.22	+0.3
3,336,774	+		MIT1002_02998	0.22	-0.2
3,336,791	-		MIT1002_02998	0.22	-2.0
3,336,829	+		MIT1002_02998	0.23	-1.3
3,336,830	+		MIT1002_02998	0.23	-0.5
3,336,854	-		MIT1002_02998	0.24	-0.7
3,336,872	-		MIT1002_02998	0.25	-0.3
3,336,879	-		MIT1002_02998	0.25	+1.6
3,336,919	-		MIT1002_02998	0.26	+0.5
3,336,935	+		MIT1002_02998	0.27	+0.2