Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02852

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
3,164,402	+				-1.1
3,164,403	-				+0.4
3,164,410	-		MIT1002_02851	0.11	-0.3
3,164,410	-		MIT1002_02851	0.11	+1.7
3,164,410	-		MIT1002_02851	0.11	+2.4
3,164,486	+		MIT1002_02851	0.17	+0.7
3,164,559	+		MIT1002_02851	0.24	-0.1
3,164,561	+		MIT1002_02851	0.24	-2.0
3,164,570	-		MIT1002_02851	0.25	+1.6
3,164,634	-		MIT1002_02851	0.31	-1.4
3,164,771	+		MIT1002_02851	0.43	+2.0
3,164,792	+		MIT1002_02851	0.45	-0.7
3,164,915	+		MIT1002_02851	0.56	-0.3
3,164,923	-		MIT1002_02851	0.57	+0.9
3,164,987	+		MIT1002_02851	0.63	-0.8
3,164,987	+		MIT1002_02851	0.63	-0.1
3,164,987	+		MIT1002_02851	0.63	-2.1
3,164,987	+		MIT1002_02851	0.63	+0.7
3,164,995	-		MIT1002_02851	0.63	-0.8
3,164,995	-		MIT1002_02851	0.63	-0.7
3,164,995	-		MIT1002_02851	0.63	+1.9
3,164,995	-		MIT1002_02851	0.63	+1.7
3,165,064	-		MIT1002_02851	0.69	+0.7
3,165,074	+		MIT1002_02851	0.70	-0.4
3,165,082	-		MIT1002_02851	0.71	+0.8
3,165,082	-		MIT1002_02851	0.71	+0.6
3,165,082	-		MIT1002_02851	0.71	-0.7
3,165,206	-		MIT1002_02851	0.82	+0.2
3,165,216	-		MIT1002_02851	0.83	-0.1
3,165,285	-		MIT1002_02851	0.89	-0.4
3,165,295	+				+0.5
3,165,332	-				+0.2
3,165,397	-				-0.1
3,165,472	+				-0.2
3,165,616	+		MIT1002_02852	0.22	+1.7
3,165,616	+		MIT1002_02852	0.22	-1.7
3,165,624	-		MIT1002_02852	0.23	+0.7
3,165,624	-		MIT1002_02852	0.23	+0.1
3,165,624	-		MIT1002_02852	0.23	+0.9
3,165,624	-		MIT1002_02852	0.23	-1.6
3,165,624	-		MIT1002_02852	0.23	+0.9
3,165,624	-		MIT1002_02852	0.23	+1.0
3,165,641	+		MIT1002_02852	0.24	-0.4
3,165,641	+		MIT1002_02852	0.24	+1.0
3,165,641	+		MIT1002_02852	0.24	-0.8
3,165,641	+		MIT1002_02852	0.24	+0.2
3,165,643	+		MIT1002_02852	0.24	-1.1
3,165,643	+		MIT1002_02852	0.24	+6.0
3,165,643	+		MIT1002_02852	0.24	+0.9
3,165,649	-		MIT1002_02852	0.25	+0.0
3,165,649	-		MIT1002_02852	0.25	-1.2
3,165,649	-		MIT1002_02852	0.25	-0.8
3,165,649	-		MIT1002_02852	0.25	-1.6
3,165,649	-		MIT1002_02852	0.25	-0.3
3,165,649	-		MIT1002_02852	0.25	-0.2
3,165,649	-		MIT1002_02852	0.25	+0.5
3,165,651	-		MIT1002_02852	0.25	-0.2
3,165,651	-		MIT1002_02852	0.25	+0.8
3,165,654	+		MIT1002_02852	0.25	+0.5
3,165,655	+		MIT1002_02852	0.26	-1.4
3,165,655	+		MIT1002_02852	0.26	-0.9
3,165,655	+		MIT1002_02852	0.26	+0.1
3,165,663	-		MIT1002_02852	0.26	+0.0
3,165,663	-		MIT1002_02852	0.26	-0.1
3,165,754	-		MIT1002_02852	0.35	+0.7
3,165,909	+		MIT1002_02852	0.51	-0.6
3,165,957	+		MIT1002_02852	0.55	+0.4
3,165,957	+		MIT1002_02852	0.55	+0.9
3,165,998	+		MIT1002_02852	0.59	+0.3
3,166,048	+		MIT1002_02852	0.64	-0.2
3,166,048	+		MIT1002_02852	0.64	+1.3
3,166,096	-		MIT1002_02852	0.69	-0.7
3,166,125	+		MIT1002_02852	0.72	+0.2
3,166,125	+		MIT1002_02852	0.72	-0.8
3,166,125	+		MIT1002_02852	0.72	-0.0
3,166,125	+		MIT1002_02852	0.72	+0.2
3,166,125	+		MIT1002_02852	0.72	+1.3
3,166,125	+		MIT1002_02852	0.72	+1.7
3,166,133	-		MIT1002_02852	0.73	+1.5
3,166,133	-		MIT1002_02852	0.73	-0.4
3,166,133	-		MIT1002_02852	0.73	-0.2
3,166,133	-		MIT1002_02852	0.73	-1.7
3,166,133	-		MIT1002_02852	0.73	+0.8
3,166,133	-		MIT1002_02852	0.73	-0.3
3,166,133	-		MIT1002_02852	0.73	-0.1
3,166,133	-		MIT1002_02852	0.73	-1.4
3,166,133	-		MIT1002_02852	0.73	-0.6
3,166,215	+		MIT1002_02852	0.81	-0.1
3,166,215	+		MIT1002_02852	0.81	-0.9
3,166,223	-		MIT1002_02852	0.81	+1.7
3,166,254	+		MIT1002_02852	0.84	-0.1
3,166,262	-		MIT1002_02852	0.85	+0.4
3,166,292	-		MIT1002_02852	0.88	-2.3
3,166,298	+		MIT1002_02852	0.89	+0.2
3,166,342	+				-1.5
3,166,384	-				-0.3
3,166,390	+				-0.3
3,166,390	+				+1.1
3,166,390	+				-1.7
3,166,398	-				-0.4
3,166,398	-				-0.6
3,166,400	+				-1.3
3,166,434	+				-0.5
3,166,434	+				+0.1
3,166,455	+				+0.2
3,166,463	-				+1.2
3,166,486	-				+0.9
3,166,523	+		MIT1002_02853	0.10	+0.2
3,166,533	+		MIT1002_02853	0.11	+1.4
3,166,551	-		MIT1002_02853	0.13	+0.2
3,166,567	+		MIT1002_02853	0.15	+0.8
3,166,658	-		MIT1002_02853	0.23	+0.2
3,166,660	+		MIT1002_02853	0.23	-0.3
3,166,665	-		MIT1002_02853	0.24	-0.2
3,166,678	+		MIT1002_02853	0.25	+1.0
3,166,690	+		MIT1002_02853	0.26	+1.1
3,166,692	-		MIT1002_02853	0.26	+1.7
3,166,778	+		MIT1002_02853	0.34	+0.6
3,166,786	-		MIT1002_02853	0.35	+0.7
3,166,792	+		MIT1002_02853	0.35	+0.1
3,166,866	+		MIT1002_02853	0.42	-0.6
3,166,963	+		MIT1002_02853	0.51	-2.3
3,166,989	-		MIT1002_02853	0.54	-0.7
3,167,006	+		MIT1002_02853	0.55	-1.7
3,167,053	+		MIT1002_02853	0.60	+0.4
3,167,133	+		MIT1002_02853	0.67	-1.0
3,167,133	-		MIT1002_02853	0.67	-0.1
3,167,135	+		MIT1002_02853	0.67	-2.5
3,167,143	+		MIT1002_02853	0.68	+0.1
3,167,148	+		MIT1002_02853	0.69	+0.4
3,167,150	+		MIT1002_02853	0.69	+0.2
3,167,156	-		MIT1002_02853	0.69	-0.0
3,167,156	-		MIT1002_02853	0.69	+0.1
3,167,158	-		MIT1002_02853	0.70	-0.2
3,167,188	+		MIT1002_02853	0.72	-0.6
3,167,201	+		MIT1002_02853	0.74	-0.4
3,167,372	-		MIT1002_02853	0.89	+0.3
3,167,380	+				+0.7
3,167,388	-				+0.4
3,167,398	-				-0.2