Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02560

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
2,857,399	-		MIT1002_02558	0.88	+1.2
2,857,399	-		MIT1002_02558	0.88	-0.4
2,857,413	+		MIT1002_02558	0.89	+1.9
2,857,423	+		MIT1002_02558	0.89	+1.3
2,857,450	+		MIT1002_02558	0.90	+0.1
2,857,463	+				-1.4
2,857,525	+				-0.8
2,857,549	+				-0.6
2,857,550	+				-1.5
2,857,557	+				+0.8
2,857,565	-				+0.3
2,857,576	+				-0.7
2,857,657	+				-0.1
2,857,678	+				-0.6
2,857,678	+				+0.2
2,857,712	+				+2.0
2,857,719	-				+0.1
2,857,720	-				+2.2
2,857,742	-				-0.5
2,857,742	-				+0.1
2,857,834	+				-1.4
2,857,953	-				-0.8
2,858,012	+		MIT1002_02559	0.28	+0.8
2,858,176	-		MIT1002_02559	0.83	-1.4
2,858,176	-		MIT1002_02559	0.83	-1.0
2,858,206	-				+2.0
2,858,225	+				-0.2
2,858,295	+				-0.3
2,858,305	-				+0.4
2,858,311	+				+1.1
2,858,341	-				+0.0
2,858,354	-				-0.1
2,858,405	+				+0.0
2,858,405	+				-1.3
2,858,422	+				+0.4
2,858,432	-				-0.4
2,858,433	-				-1.6
2,858,469	+		MIT1002_02560	0.13	-0.9
2,858,505	+		MIT1002_02560	0.16	+0.0
2,858,505	+		MIT1002_02560	0.16	+0.9
2,858,528	+		MIT1002_02560	0.18	-0.3
2,858,540	+		MIT1002_02560	0.19	+0.0
2,858,548	-		MIT1002_02560	0.20	-2.1
2,858,579	+		MIT1002_02560	0.22	-0.6
2,858,589	-		MIT1002_02560	0.23	+1.4
2,858,619	-		MIT1002_02560	0.26	-1.6
2,858,654	-		MIT1002_02560	0.29	+1.0
2,858,687	+		MIT1002_02560	0.31	-1.2
2,858,687	+		MIT1002_02560	0.31	-0.5
2,858,862	+		MIT1002_02560	0.46	+0.4
2,858,862	+		MIT1002_02560	0.46	-1.4
2,858,875	-		MIT1002_02560	0.48	-0.2
2,858,999	+		MIT1002_02560	0.58	-1.4
2,859,034	+		MIT1002_02560	0.61	-2.4
2,859,120	-		MIT1002_02560	0.69	+0.1
2,859,135	+		MIT1002_02560	0.70	-2.8
2,859,191	-		MIT1002_02560	0.75	+1.9
2,859,204	+		MIT1002_02560	0.76	+1.6
2,859,263	+		MIT1002_02560	0.81	+2.9
2,859,273	+		MIT1002_02560	0.82	-1.8
2,859,281	-		MIT1002_02560	0.82	+0.4
2,859,281	-		MIT1002_02560	0.82	-1.2
2,859,289	-		MIT1002_02560	0.83	+2.4
2,859,333	+		MIT1002_02560	0.87	-0.8
2,859,358	+		MIT1002_02560	0.89	-0.8
2,859,358	+		MIT1002_02560	0.89	-0.3
2,859,411	+				+0.7
2,859,472	-				-1.6
2,859,570	+				+0.6
2,859,570	+				-0.6
2,859,583	+		MIT1002_02561	0.12	+0.1
2,859,597	-		MIT1002_02561	0.14	+0.4
2,859,774	+		MIT1002_02561	0.38	-0.0
2,859,836	+		MIT1002_02561	0.47	-0.4
2,859,841	+		MIT1002_02561	0.47	+1.0
2,859,844	-		MIT1002_02561	0.48	-0.1
2,859,871	+		MIT1002_02561	0.52	-0.2
2,859,871	+		MIT1002_02561	0.52	-0.2
2,859,890	+		MIT1002_02561	0.54	-1.2
2,859,892	+		MIT1002_02561	0.54	-0.5
2,859,892	+		MIT1002_02561	0.54	-2.1
2,859,898	-		MIT1002_02561	0.55	+0.8
2,859,900	-		MIT1002_02561	0.56	+1.0
2,859,900	-		MIT1002_02561	0.56	-0.2
2,859,962	+		MIT1002_02561	0.64	-0.8
2,859,970	-		MIT1002_02561	0.65	+0.3
2,859,970	-		MIT1002_02561	0.65	-1.5
2,859,981	+		MIT1002_02561	0.67	-2.1
2,860,215	+				-0.2
2,860,241	+				-0.2
2,860,244	-				+0.9
2,860,407	+				-0.4
2,860,407	+				+0.5
2,860,415	-				-0.1
2,860,427	-				+1.6
2,860,450	-		MIT1002_02562	0.11	+0.2