Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02474

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
2,763,429	+				-0.4
2,763,429	+				+1.2
2,763,439	+				-0.0
2,763,493	-		MIT1002_02473	0.13	+0.1
2,763,499	+		MIT1002_02473	0.14	-0.3
2,763,499	+		MIT1002_02473	0.14	+0.9
2,763,507	-		MIT1002_02473	0.16	-1.2
2,763,507	-		MIT1002_02473	0.16	+1.2
2,763,507	-		MIT1002_02473	0.16	-1.6
2,763,507	-		MIT1002_02473	0.16	+1.1
2,763,507	-		MIT1002_02473	0.16	+1.2
2,763,507	-		MIT1002_02473	0.16	+0.4
2,763,507	-		MIT1002_02473	0.16	-0.9
2,763,507	-		MIT1002_02473	0.16	+0.3
2,763,521	+		MIT1002_02473	0.18	+1.3
2,763,529	-		MIT1002_02473	0.19	-0.8
2,763,624	+		MIT1002_02473	0.36	+0.4
2,763,630	-		MIT1002_02473	0.37	+0.2
2,763,632	-		MIT1002_02473	0.37	-0.9
2,763,660	+		MIT1002_02473	0.42	-1.0
2,763,668	-		MIT1002_02473	0.43	-0.1
2,763,668	-		MIT1002_02473	0.43	+0.5
2,763,700	-		MIT1002_02473	0.48	-1.4
2,763,740	+		MIT1002_02473	0.55	-0.3
2,763,850	+		MIT1002_02473	0.74	+0.8
2,763,860	-		MIT1002_02473	0.75	+0.2
2,763,888	-		MIT1002_02473	0.80	+0.7
2,764,074	+				-0.1
2,764,082	-				+1.1
2,764,082	-				+0.9
2,764,083	+				-0.8
2,764,162	-				-0.3
2,764,264	-				-1.3
2,764,264	-				-0.7
2,764,428	+				+0.4
2,764,500	-		MIT1002_02474	0.11	+0.5
2,764,502	-		MIT1002_02474	0.11	-0.9
2,764,529	-		MIT1002_02474	0.15	-0.9
2,764,542	+		MIT1002_02474	0.16	+2.4
2,764,542	+		MIT1002_02474	0.16	-0.3
2,764,550	-		MIT1002_02474	0.17	+1.0
2,764,554	+		MIT1002_02474	0.18	+0.4
2,764,562	+		MIT1002_02474	0.19	-0.1
2,764,593	-		MIT1002_02474	0.23	-0.2
2,764,682	-		MIT1002_02474	0.35	+2.4
2,764,729	+		MIT1002_02474	0.41	+0.7
2,764,737	-		MIT1002_02474	0.42	+0.7
2,764,737	-		MIT1002_02474	0.42	+1.8
2,764,751	+		MIT1002_02474	0.44	-0.8
2,764,764	+		MIT1002_02474	0.46	+0.6
2,764,783	+		MIT1002_02474	0.48	-1.4
2,764,783	+		MIT1002_02474	0.48	-1.8
2,764,791	+		MIT1002_02474	0.49	+0.4
2,764,791	-		MIT1002_02474	0.49	+0.6
2,764,791	-		MIT1002_02474	0.49	+0.3
2,764,801	-		MIT1002_02474	0.50	-1.0
2,764,863	-		MIT1002_02474	0.59	-2.6
2,764,863	-		MIT1002_02474	0.59	+0.6
2,764,876	+		MIT1002_02474	0.60	-0.2
2,764,884	-		MIT1002_02474	0.61	+1.0
2,765,010	+		MIT1002_02474	0.78	-0.7
2,765,015	+		MIT1002_02474	0.79	+1.8
2,765,015	+		MIT1002_02474	0.79	+0.1
2,765,015	+		MIT1002_02474	0.79	-0.2
2,765,015	+		MIT1002_02474	0.79	-0.0
2,765,015	+		MIT1002_02474	0.79	+0.6
2,765,015	+		MIT1002_02474	0.79	+1.2
2,765,015	+		MIT1002_02474	0.79	-0.3
2,765,023	-		MIT1002_02474	0.80	-0.9
2,765,023	-		MIT1002_02474	0.80	-0.2
2,765,023	-		MIT1002_02474	0.80	+0.7
2,765,023	-		MIT1002_02474	0.80	+0.9
2,765,023	-		MIT1002_02474	0.80	-0.2
2,765,023	-		MIT1002_02474	0.80	-0.4
2,765,023	-		MIT1002_02474	0.80	-1.0
2,765,023	-		MIT1002_02474	0.80	-0.5
2,765,023	-		MIT1002_02474	0.80	-0.7
2,765,023	-		MIT1002_02474	0.80	-0.2
2,765,025	+		MIT1002_02474	0.80	+1.1
2,765,025	+		MIT1002_02474	0.80	+0.3
2,765,025	+		MIT1002_02474	0.80	-0.3
2,765,025	+		MIT1002_02474	0.80	+0.6
2,765,033	-		MIT1002_02474	0.81	+2.4
2,765,033	-		MIT1002_02474	0.81	+1.0
2,765,033	-		MIT1002_02474	0.81	-0.6
2,765,130	+				+1.0
2,765,232	-				+0.4
2,765,246	+				+0.4
2,765,246	+				-0.0
2,765,246	+				-0.5
2,765,274	+				-0.4
2,765,277	-				-2.1
2,765,288	-				+0.8
2,765,290	+				-1.3
2,765,314	+				+0.4
2,765,314	+				+1.0
2,765,314	+				+1.5
2,765,314	+				-1.9
2,765,314	+				-0.3
2,765,314	+				+0.5
2,765,314	+				-0.3
2,765,314	+				-0.2
2,765,322	-				+0.4
2,765,322	-				-0.7
2,765,322	-				-1.0
2,765,322	-				-0.5
2,765,322	-				+0.8
2,765,322	-				+2.0
2,765,322	-				+1.9
2,765,322	-				+0.8
2,765,322	-				-0.1
2,765,322	-				+0.5
2,765,322	-				-0.1
2,765,322	-				+1.6
2,765,329	-				-0.8
2,765,346	-				-1.5
2,765,365	-				-0.3
2,765,413	+		MIT1002_02475	0.10	-0.4
2,765,431	-		MIT1002_02475	0.13	-0.0
2,765,444	-		MIT1002_02475	0.15	-0.3
2,765,465	+		MIT1002_02475	0.18	+2.2
2,765,465	+		MIT1002_02475	0.18	-0.7
2,765,470	+		MIT1002_02475	0.19	+0.8
2,765,472	+		MIT1002_02475	0.19	+1.2
2,765,480	-		MIT1002_02475	0.21	-0.2
2,765,480	-		MIT1002_02475	0.21	-0.3
2,765,482	+		MIT1002_02475	0.21	-0.1
2,765,583	-		MIT1002_02475	0.37	+0.1
2,765,600	+		MIT1002_02475	0.40	-0.5
2,765,600	+		MIT1002_02475	0.40	+0.9
2,765,644	+		MIT1002_02475	0.47	+0.4
2,765,644	+		MIT1002_02475	0.47	+0.1
2,765,652	-		MIT1002_02475	0.48	+0.2
2,765,652	-		MIT1002_02475	0.48	-0.3
2,765,656	+		MIT1002_02475	0.48	-1.2
2,765,664	-		MIT1002_02475	0.50	+0.4
2,765,664	-		MIT1002_02475	0.50	+0.1
2,765,666	+		MIT1002_02475	0.50	-0.6
2,765,694	-		MIT1002_02475	0.55	-1.9
2,765,716	+		MIT1002_02475	0.58	+0.3
2,765,716	+		MIT1002_02475	0.58	-0.2
2,765,724	-		MIT1002_02475	0.59	-0.2
2,765,742	+		MIT1002_02475	0.62	+1.4
2,765,742	+		MIT1002_02475	0.62	+0.2
2,765,838	-		MIT1002_02475	0.77	+0.4
2,765,861	+		MIT1002_02475	0.81	-0.1
2,765,900	-		MIT1002_02475	0.87	-0.7
2,765,924	-				+0.2
2,765,926	+				+0.6
2,765,934	-				-1.8
2,765,934	-				+1.0
2,765,936	+				-0.6
2,765,957	+				-0.3
2,766,001	+				-0.2
2,766,001	+				-1.9
2,766,009	-				-1.3
2,766,009	-				-0.7
2,766,015	+				-1.6
2,766,023	-				+0.4
2,766,036	+				-0.9
2,766,036	+				+1.4
2,766,036	+				-1.9
2,766,036	+				-0.0
2,766,036	+				-0.4
2,766,044	-				-0.1
2,766,049	+				-1.1
2,766,071	-				+0.0
2,766,081	+				-0.9
2,766,135	-		MIT1002_02476	0.21	+0.1
2,766,164	+		MIT1002_02476	0.27	+0.5
2,766,172	-		MIT1002_02476	0.29	-0.4