Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02424

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
2,706,433	+		MIT1002_02423	0.33	-0.6
2,706,441	-		MIT1002_02423	0.34	-0.6
2,706,480	-		MIT1002_02423	0.37	-0.4
2,706,483	+		MIT1002_02423	0.37	+1.6
2,706,491	-		MIT1002_02423	0.38	-0.4
2,706,551	+		MIT1002_02423	0.43	+1.0
2,706,551	+		MIT1002_02423	0.43	+0.5
2,706,553	+		MIT1002_02423	0.43	-0.1
2,706,559	-		MIT1002_02423	0.44	-1.2
2,706,565	+		MIT1002_02423	0.44	+0.6
2,706,565	+		MIT1002_02423	0.44	-0.6
2,706,573	-		MIT1002_02423	0.45	-0.8
2,706,575	+		MIT1002_02423	0.45	-0.2
2,706,575	+		MIT1002_02423	0.45	-0.2
2,706,634	+		MIT1002_02423	0.50	-0.0
2,706,653	-		MIT1002_02423	0.51	+0.8
2,706,686	+		MIT1002_02423	0.54	+0.1
2,706,686	+		MIT1002_02423	0.54	+0.8
2,706,706	+		MIT1002_02423	0.56	-0.6
2,706,714	-		MIT1002_02423	0.56	-0.2
2,706,714	-		MIT1002_02423	0.56	+0.4
2,706,714	-		MIT1002_02423	0.56	+0.3
2,706,744	+		MIT1002_02423	0.59	-1.2
2,706,744	-		MIT1002_02423	0.59	-0.3
2,706,885	+		MIT1002_02423	0.70	-1.5
2,706,887	+		MIT1002_02423	0.70	+1.0
2,706,893	-		MIT1002_02423	0.71	-0.5
2,706,893	-		MIT1002_02423	0.71	+0.1
2,706,895	-		MIT1002_02423	0.71	+0.1
2,707,029	+		MIT1002_02423	0.82	-0.4
2,707,050	+		MIT1002_02423	0.83	-0.1
2,707,057	+		MIT1002_02423	0.84	-1.1
2,707,148	-				+0.4
2,707,206	-				-1.0
2,707,417	-				+0.3
2,707,500	-				-0.6
2,707,504	+				+0.4
2,707,538	-		MIT1002_02424	0.14	-0.6
2,707,546	+		MIT1002_02424	0.15	+0.1
2,707,546	+		MIT1002_02424	0.15	+0.8
2,707,554	-		MIT1002_02424	0.16	+0.6
2,707,599	+		MIT1002_02424	0.22	+1.6
2,707,607	-		MIT1002_02424	0.23	-2.2
2,707,672	+		MIT1002_02424	0.32	+0.1
2,707,817	+		MIT1002_02424	0.51	-0.2
2,707,868	+		MIT1002_02424	0.58	-0.2
2,707,878	+		MIT1002_02424	0.59	-2.3
2,707,903	-		MIT1002_02424	0.62	-1.4
2,707,903	-		MIT1002_02424	0.62	+0.0
2,707,968	-		MIT1002_02424	0.71	-0.4
2,707,997	+		MIT1002_02424	0.75	+1.6
2,708,012	+		MIT1002_02424	0.77	-0.4
2,708,012	+		MIT1002_02424	0.77	-0.2
2,708,012	+		MIT1002_02424	0.77	+0.5
2,708,012	+		MIT1002_02424	0.77	-0.2
2,708,020	-		MIT1002_02424	0.78	-0.9
2,708,022	-		MIT1002_02424	0.78	-0.3
2,708,149	+				-0.6
2,708,157	-				-3.0
2,708,157	-				+0.8
2,708,157	-				+0.5
2,708,202	+				-0.4
2,708,210	-				+0.6
2,708,210	-				-0.5
2,708,264	+				+0.9
2,708,264	+				+0.2
2,708,360	-		MIT1002_02425	0.17	-3.1
2,708,539	+		MIT1002_02425	0.38	+0.7
2,708,545	+		MIT1002_02425	0.39	+0.4
2,708,553	-		MIT1002_02425	0.39	-0.4
2,708,561	-		MIT1002_02425	0.40	+1.3
2,708,598	+		MIT1002_02425	0.45	+0.6
2,708,644	+		MIT1002_02425	0.50	-0.3
2,708,651	-		MIT1002_02425	0.51	-0.4
2,708,651	-		MIT1002_02425	0.51	+0.9
2,708,652	-		MIT1002_02425	0.51	+0.4
2,708,766	+		MIT1002_02425	0.64	-1.2
2,708,774	-		MIT1002_02425	0.65	-0.0
2,708,776	+		MIT1002_02425	0.65	-0.2
2,708,811	-		MIT1002_02425	0.69	-0.2
2,708,811	-		MIT1002_02425	0.69	+0.3
2,708,811	-		MIT1002_02425	0.69	-0.2
2,708,811	-		MIT1002_02425	0.69	-1.0
2,708,811	-		MIT1002_02425	0.69	+0.6
2,708,863	+		MIT1002_02425	0.75	+0.1
2,708,866	-		MIT1002_02425	0.76	-0.1
2,708,952	+		MIT1002_02425	0.86	-1.3
2,708,970	+		MIT1002_02425	0.88	+0.4
2,708,985	-		MIT1002_02425	0.89	+1.6
2,708,985	-		MIT1002_02425	0.89	+0.6
2,709,082	-				+0.6
2,709,087	-				-0.2
2,709,087	-				+0.2
2,709,087	-				+0.4
2,709,092	-				+0.1
2,709,186	-				-1.8