Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02389

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
2,662,254	-				-1.4
2,662,262	+				+1.5
2,662,305	+				-2.1
2,662,319	+				-0.5
2,662,319	+				-0.5
2,662,494	+				-0.1
2,662,598	-		MIT1002_02386	0.50	-0.7
2,662,778	-		MIT1002_02387	0.31	+0.7
2,662,778	-		MIT1002_02387	0.31	-0.6
2,662,778	-		MIT1002_02387	0.31	+0.1
2,662,780	-		MIT1002_02387	0.32	-1.5
2,662,824	-		MIT1002_02387	0.55	+0.1
2,662,897	+				-0.4
2,662,931	+				+0.2
2,662,966	+				+0.4
2,663,019	-		MIT1002_02388	0.11	+0.9
2,663,037	-		MIT1002_02388	0.19	-0.2
2,663,039	-		MIT1002_02388	0.20	-0.5
2,663,063	+		MIT1002_02388	0.31	-1.6
2,663,063	+		MIT1002_02388	0.31	+1.9
2,663,063	+		MIT1002_02388	0.31	-0.2
2,663,071	-		MIT1002_02388	0.35	-0.1
2,663,071	-		MIT1002_02388	0.35	-2.0
2,663,089	-		MIT1002_02388	0.43	+0.7
2,663,120	+		MIT1002_02388	0.57	-0.4
2,663,144	+		MIT1002_02388	0.68	+0.5
2,663,152	-		MIT1002_02388	0.72	-1.3
2,663,195	+				-0.4
2,663,203	-				-1.4
2,663,283	+				-0.5
2,663,370	-				-1.3
2,663,384	+				+1.0
2,663,385	-				-0.1
2,663,389	+				-1.9
2,663,472	+				+0.2
2,663,575	-		MIT1002_02389	0.12	+0.2
2,663,580	-		MIT1002_02389	0.12	-1.0
2,663,829	+		MIT1002_02389	0.20	-0.3
2,663,829	+		MIT1002_02389	0.20	+0.5
2,663,837	-		MIT1002_02389	0.21	+0.1
2,663,837	-		MIT1002_02389	0.21	+0.4
2,663,881	+		MIT1002_02389	0.22	-0.7
2,663,881	+		MIT1002_02389	0.22	-1.8
2,663,889	-		MIT1002_02389	0.23	-2.7
2,663,889	-		MIT1002_02389	0.23	-0.8
2,663,917	-		MIT1002_02389	0.23	-0.5
2,664,003	+		MIT1002_02389	0.26	-1.0
2,664,016	-		MIT1002_02389	0.27	-0.3
2,664,142	+		MIT1002_02389	0.31	+0.3
2,664,145	-		MIT1002_02389	0.31	+1.9
2,664,145	-		MIT1002_02389	0.31	-0.3
2,664,155	+		MIT1002_02389	0.32	+0.4
2,664,155	+		MIT1002_02389	0.32	-0.3
2,664,155	+		MIT1002_02389	0.32	+1.4
2,664,163	-		MIT1002_02389	0.32	-0.9
2,664,214	+		MIT1002_02389	0.34	+1.3
2,664,222	-		MIT1002_02389	0.34	-1.3
2,664,307	-		MIT1002_02389	0.37	-0.5
2,664,411	+		MIT1002_02389	0.40	+1.5
2,664,419	-		MIT1002_02389	0.41	-0.8
2,664,419	-		MIT1002_02389	0.41	-0.1
2,664,441	+		MIT1002_02389	0.41	-1.4
2,664,454	+		MIT1002_02389	0.42	-0.1
2,664,586	+		MIT1002_02389	0.46	-0.9
2,664,677	+		MIT1002_02389	0.49	-1.2
2,664,753	+		MIT1002_02389	0.52	-0.5
2,664,786	-		MIT1002_02389	0.53	-1.3
2,664,794	-		MIT1002_02389	0.53	-0.7
2,664,927	+		MIT1002_02389	0.58	+0.9
2,664,939	+		MIT1002_02389	0.58	-0.0
2,664,947	-		MIT1002_02389	0.58	+0.6
2,664,957	-		MIT1002_02389	0.59	-2.3
2,665,085	+		MIT1002_02389	0.63	+0.1
2,665,093	-		MIT1002_02389	0.63	+1.1
2,665,104	-		MIT1002_02389	0.64	-0.2
2,665,154	+		MIT1002_02389	0.66	-0.9
2,665,154	+		MIT1002_02389	0.66	-0.8
2,665,162	-		MIT1002_02389	0.66	-1.1
2,665,174	-		MIT1002_02389	0.66	-0.2
2,665,226	+		MIT1002_02389	0.68	-0.8
2,665,233	-		MIT1002_02389	0.68	+1.0
2,665,256	+		MIT1002_02389	0.69	-0.0
2,665,277	+		MIT1002_02389	0.70	+0.2
2,665,330	-		MIT1002_02389	0.71	-0.9
2,665,407	+		MIT1002_02389	0.74	-0.0
2,665,455	+		MIT1002_02389	0.76	-0.6
2,665,529	+		MIT1002_02389	0.78	+3.5
2,665,529	+		MIT1002_02389	0.78	-1.1
2,665,529	+		MIT1002_02389	0.78	-2.8
2,665,529	+		MIT1002_02389	0.78	+0.1
2,665,537	-		MIT1002_02389	0.79	-1.5
2,665,537	-		MIT1002_02389	0.79	-0.0
2,665,537	-		MIT1002_02389	0.79	-1.0
2,665,537	-		MIT1002_02389	0.79	-0.6
2,665,537	-		MIT1002_02389	0.79	-0.0
2,665,537	-		MIT1002_02389	0.79	+1.5
2,665,537	-		MIT1002_02389	0.79	+0.4
2,665,537	-		MIT1002_02389	0.79	-2.0
2,665,585	+		MIT1002_02389	0.80	-0.9
2,665,631	-		MIT1002_02389	0.82	-1.2
2,665,661	+		MIT1002_02389	0.83	+0.4
2,665,662	+		MIT1002_02389	0.83	-0.1
2,665,740	-		MIT1002_02389	0.85	-0.9
2,665,835	+		MIT1002_02389	0.89	-2.4
2,665,879	-				+0.5
2,665,894	-				+1.9
2,665,909	-				-0.2
2,665,985	+				+0.2
2,665,993	-				-1.0
2,666,022	-				+1.4
2,666,077	+				-1.1
2,666,186	+				-2.8
2,666,194	-		MIT1002_02390	0.12	+1.5
2,666,242	-		MIT1002_02390	0.29	-1.4
2,666,245	+		MIT1002_02390	0.30	-0.1
2,666,281	-		MIT1002_02390	0.42	-0.5
2,666,330	+		MIT1002_02390	0.59	-0.6
2,666,358	-		MIT1002_02390	0.68	-1.6
2,666,406	+		MIT1002_02390	0.84	-3.4
2,666,428	+				-0.7
2,666,436	-				-1.5
2,666,436	-				-2.1
2,666,487	+		MIT1002_02391	0.11	-0.8
2,666,774	-				-0.8
2,666,779	+				+1.0
2,666,908	-				+0.6
2,666,936	+				-0.3
2,666,999	-				-0.3
2,667,009	+				+1.1
2,667,019	+				-1.0
2,667,019	+				-0.3
2,667,068	+				-2.4
2,667,111	-				+0.9
2,667,164	+				-2.5