Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02227

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
2,487,386	+		MIT1002_02226	0.11	-1.1
2,487,386	+		MIT1002_02226	0.11	+0.2
2,487,394	-		MIT1002_02226	0.12	+0.0
2,487,535	+		MIT1002_02226	0.26	+1.8
2,487,562	-		MIT1002_02226	0.29	+1.1
2,487,622	-		MIT1002_02226	0.35	+0.8
2,487,626	+		MIT1002_02226	0.35	-0.8
2,487,634	+		MIT1002_02226	0.36	-0.8
2,487,704	-		MIT1002_02226	0.43	+1.0
2,487,719	-		MIT1002_02226	0.45	+0.1
2,487,736	+		MIT1002_02226	0.46	+0.9
2,487,737	+		MIT1002_02226	0.46	-2.1
2,487,745	-		MIT1002_02226	0.47	+0.3
2,487,745	-		MIT1002_02226	0.47	-1.9
2,487,768	+		MIT1002_02226	0.49	+0.0
2,487,864	-		MIT1002_02226	0.59	+0.5
2,487,873	-		MIT1002_02226	0.60	-0.0
2,487,877	+		MIT1002_02226	0.60	-1.8
2,488,018	+		MIT1002_02226	0.74	+0.7
2,488,026	-		MIT1002_02226	0.75	+0.0
2,488,053	-		MIT1002_02226	0.78	-0.5
2,488,056	+		MIT1002_02226	0.78	+0.2
2,488,064	+		MIT1002_02226	0.79	+0.5
2,488,072	-		MIT1002_02226	0.80	-1.0
2,488,072	-		MIT1002_02226	0.80	-0.7
2,488,117	+		MIT1002_02226	0.84	+1.2
2,488,141	+		MIT1002_02226	0.87	-0.4
2,488,144	-		MIT1002_02226	0.87	-0.1
2,488,144	-		MIT1002_02226	0.87	-0.2
2,488,144	-		MIT1002_02226	0.87	+1.1
2,488,159	+		MIT1002_02226	0.89	-0.9
2,488,205	+				-0.1
2,488,211	-				-1.2
2,488,219	+				+0.1
2,488,239	+				+0.1
2,488,298	-				+1.1
2,488,424	+				+0.8
2,488,524	-		MIT1002_02227	0.18	+0.9
2,488,586	+		MIT1002_02227	0.25	+0.2
2,488,649	-		MIT1002_02227	0.32	-0.7
2,488,798	-		MIT1002_02227	0.49	+1.3
2,488,896	+		MIT1002_02227	0.61	+0.2
2,488,913	+		MIT1002_02227	0.63	+0.8
2,488,952	-		MIT1002_02227	0.67	+0.2
2,488,990	+		MIT1002_02227	0.71	-0.7
2,489,053	+		MIT1002_02227	0.79	-0.6
2,489,283	+				-0.5
2,489,283	-				+1.6
2,489,291	-				+0.1
2,489,297	-				+1.3
2,489,463	-		MIT1002_02228	0.28	+1.0
2,489,463	-		MIT1002_02228	0.28	+0.2
2,489,490	+		MIT1002_02228	0.31	-0.1
2,489,630	+		MIT1002_02228	0.49	+0.3
2,489,630	+		MIT1002_02228	0.49	-0.1
2,489,635	+		MIT1002_02228	0.49	-0.5
2,489,638	-		MIT1002_02228	0.50	+0.9
2,489,638	-		MIT1002_02228	0.50	-1.8
2,489,697	+		MIT1002_02228	0.57	-1.2
2,489,705	-		MIT1002_02228	0.58	+0.6
2,489,758	-		MIT1002_02228	0.64	+0.6
2,489,814	-		MIT1002_02228	0.71	-0.4
2,489,867	+		MIT1002_02228	0.78	+0.2
2,489,875	-		MIT1002_02228	0.79	+1.1
2,489,875	-		MIT1002_02228	0.79	+0.4
2,489,912	-		MIT1002_02228	0.83	-0.3
2,489,977	+				+0.5
2,489,985	-				-0.6
2,489,989	+				-1.5
2,489,998	-				-1.9
2,489,999	+				-0.3
2,490,049	+				+1.0