Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02136

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
2,396,490	+		MIT1002_02134	0.76	-1.7
2,396,510	-		MIT1002_02134	0.76	-2.4
2,396,612	+		MIT1002_02134	0.81	-0.8
2,396,620	-		MIT1002_02134	0.81	-1.3
2,396,659	-		MIT1002_02134	0.82	-0.8
2,396,962	-				+0.2
2,397,073	+				-0.3
2,397,193	+		MIT1002_02135	0.45	-1.6
2,397,208	-		MIT1002_02135	0.52	+0.5
2,397,364	+				-1.5
2,397,364	+				-2.0
2,397,393	+		MIT1002_02136	0.13	-1.7
2,397,401	-		MIT1002_02136	0.14	-1.7
2,397,431	+		MIT1002_02136	0.19	+0.2
2,397,433	+		MIT1002_02136	0.19	-1.3
2,397,433	+		MIT1002_02136	0.19	-1.0
2,397,434	-		MIT1002_02136	0.19	-1.1
2,397,441	-		MIT1002_02136	0.20	-0.5
2,397,468	+		MIT1002_02136	0.25	+0.5
2,397,518	+		MIT1002_02136	0.32	-0.8
2,397,552	-		MIT1002_02136	0.37	-1.9
2,397,599	+		MIT1002_02136	0.44	-1.4
2,397,599	+		MIT1002_02136	0.44	-0.5
2,397,609	+		MIT1002_02136	0.46	-0.3
2,397,618	-		MIT1002_02136	0.47	-1.2
2,397,618	-		MIT1002_02136	0.47	-0.8
2,397,727	+		MIT1002_02136	0.64	-0.3
2,397,742	+		MIT1002_02136	0.66	-1.1
2,397,750	-		MIT1002_02136	0.67	+0.9
2,397,847	+		MIT1002_02136	0.82	-1.1
2,397,992	+				-2.3
2,397,992	+				-0.8
2,397,992	+				-1.6
2,398,072	-				-1.0
2,398,157	+		MIT1002_02137	0.20	-1.8
2,398,165	-		MIT1002_02137	0.21	-1.0
2,398,316	-		MIT1002_02137	0.41	+0.4
2,398,322	-		MIT1002_02137	0.42	+0.2
2,398,338	+		MIT1002_02137	0.44	-0.1
2,398,344	-		MIT1002_02137	0.45	-0.8
2,398,477	+		MIT1002_02137	0.63	-3.1
2,398,477	+		MIT1002_02137	0.63	+0.9
2,398,479	+		MIT1002_02137	0.63	-2.4
2,398,485	-		MIT1002_02137	0.64	-0.8
2,398,522	+		MIT1002_02137	0.69	-1.5
2,398,522	+		MIT1002_02137	0.69	-0.0
2,398,522	+		MIT1002_02137	0.69	-1.6
2,398,522	+		MIT1002_02137	0.69	-1.9
2,398,530	-		MIT1002_02137	0.70	+0.5
2,398,591	+		MIT1002_02137	0.79	-2.3
2,398,625	+		MIT1002_02137	0.83	+1.6
2,398,625	+		MIT1002_02137	0.83	-0.7
2,398,633	-		MIT1002_02137	0.84	-1.4
2,398,716	-				+1.8
2,398,734	-				-1.0
2,398,813	+				-0.1
2,398,821	-				-0.4